Ictalurus punctatus (channel catfish): 108272598
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Entry
108272598 CDS
T04658
Name
(RefSeq) retinoblastoma-like protein 1 isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04110
Cell cycle
ipu04218
Cellular senescence
ipu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108272598
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108272598
04218 Cellular senescence
108272598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108272598
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
108272598
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
Rb_C
Motif
Other DBs
NCBI-GeneID:
108272598
NCBI-ProteinID:
XP_017336574
Ensembl:
ENSIPUG00000003765
UniProt:
A0A2D0S1E8
LinkDB
All DBs
Position
12:complement(4400774..4455411)
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AA seq
1048 aa
AA seq
DB search
MRGDETDSDSGRSDEGGSIQRSLETLCQELNMDEETAEESLRNFTSIWNTYTLEGEVVHW
LACSLYAACRKTLTPTIGSGMVEGNCVSLTRILRSSKLSLIQFFSKMKKWADMSNLSQDF
RNRISCLERNFEVSTVIFRKFEPIFLDMFQNHQGEPPRQPRGKKHRRHLCHTSDVFKFCW
TLFVYTKGNFHMIGDDLVNSYHLLLCCLDLVYGNALLCANKKDLINPYFKGLPTDGGSAE
EAQSVLEHLCNLHDGLVVEAKGIKEHYFKPYIRRLFEKKILKGDKDTLTELLDSPNFQDN
NKALNREYEEYVLTVGDFDERVFLGADADEEIGTPNKMTPKPPSSQLSTQMQVENNLQQH
FEKMRSLAPSTPLTGRRYLKEKEVLITPVSSATQSVSRLQSMVAGLCNAPTDTLLQIFKS
CSCDPTEAILNRLKKLGEAFKQAYTKQTDDLQGAHMDFAENRLKIAEILYFKILENVMAQ
EIKRLQGKDMTVLLEQDVFHCSLLACCLEVVLFAYSSQRTFPWILETFQLRPFYFYKVIE
VFIRSEEGLSRDMVKHLNVIEEQVLESRAWTKDSVLWEALENANYEVPTVAEVNFPSSLD
SGRNNSSGGPTHLPLVALSPIMHPRLREVRTGLGSSARKDAPPSPISLHDRFSSPAAGSA
KRRLFGDDPQPQSPVKRISVTPVKIIPNTSTENNQNTTTATVLSMATTNGQQLNIPLPVM
KNDLGSITVIQVQANQLTPLTAQVLLTSPNKAPEVHTQPTNKPRRTGSLALFFRKVYHLA
SVRLRDLCLKLDISAELRGKIWTCFEQSLVHCTDMMKDRHLDQLLLCAVYIISKISKEEH
TFQDIMKCYRSQPQASSHIYRSVLLRKRVHEQQTDDTMEVDPPTEQTNGRTDQGAKAKAD
SESDEDRGDLIQFYNSVYVLKMKSFALRYAHPAADSRVNAPPLSPFPSLRAQPLSPRRIS
QRHSVYLSPHKNGSCLKPSSAYTYKFTGSPSKELSDINLMIRQGSMSKKRAFTMEGDETE
SPTKRLSQESEDVLLKRLQDVVTERANH
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggggatgagactgattctgactctggcagatcagatgaaggcggttcgattcag
aggagcctggaaacgctttgtcaagaattaaatatggacgaagagacggcggaggagtcg
ctgaggaactttacttctatctggaacacgtatactctggagggtgaggtggtgcactgg
ttggcctgctctctgtatgcagcctgtagaaaaactttgactcccactataggtagtggc
atggtggaaggcaattgtgtctctctcaccagaatactacgttcctccaaactcagcctg
atccagttcttcagcaagatgaagaaatgggcagacatgtcaaatctctcgcaggatttc
cgtaaccgcataagctgtctcgagaggaattttgaagtttcgactgtaatctttcggaaa
ttcgagccaatatttttggacatgttccaaaatcatcaaggtgaacctccacggcagcca
agaggcaagaagcataggcgtcatctctgccacaccagtgatgttttcaagttctgttgg
acgctgtttgtgtacaccaaaggcaatttccatatgattggagatgatctggtcaactca
tatcatctcctgttgtgctgtctggacctggtctatggtaatgctttactctgtgccaac
aagaaagacctcatcaatccatatttcaaaggcttgccaacagatggcgggagcgcggag
gaggctcagtccgtgcttgagcatttgtgcaacctgcacgatggtctagtcgttgaggcg
aaagggataaaggagcactactttaaaccttacatcagacgtctatttgagaaaaaaatt
cttaaaggagacaaggacacgcttactgagttgctggattctccaaacttccaagacaat
aacaaagccttaaatcgtgaatatgaagaatatgtcctgactgtgggtgattttgatgag
cgggtttttttgggtgctgacgctgatgaggagattggcacaccaaataaaatgacccct
aagcctccatctagtcagttatcaacacaaatgcaggtcgagaacaaccttcagcagcac
tttgagaagatgcgttcgctggccccttccactccacttacagggcgtaggtacctgaag
gagaaggaggtactgatcacacctgtctcttcagctactcaaagtgtgagtcgcctgcag
agcatggtggctggcctctgcaatgcccctactgataccctgctccagatcttcaagtct
tgttcttgtgaccccactgaagccattttaaatcgtttgaagaagctaggagaggctttt
aaacaggcctacaccaaacaaacagatgatcttcagggagcccacatggactttgcagaa
aaccgtctgaagatagctgaaatactgtattttaagattctggagaatgttatggctcaa
gagattaagagactccagggtaaagatatgactgtgctgttagaacaggatgtgttccac
tgttctcttttggcctgctgtctggaggttgtgctatttgcctacagttctcaacgaacc
ttcccttggattctagaaaccttccagcttagaccattctacttctacaaggtgatcgag
gtatttatccgctctgaggagggcctctctagagacatggtgaagcacttaaacgtcata
gaagagcaggtgctggaaagcagggcttggaccaaagactcagtactttgggaagcatta
gagaatgcgaattacgaagtccctactgtagctgaggtaaattttcctagtagtcttgat
tcaggccgcaacaacagtagtgggggccccacccaccttcctctagtggctctgtcacca
atcatgcaccctcgtctccgagaggtccgcactggcctgggctcaagtgctcgcaaagat
gctcctccatctcccatctctctccatgaccgcttcagttctcctgcagcaggcagtgcc
aaaaggcgtttgtttggtgatgatcctcaacctcagtctccagtgaagcgaatatctgtc
actcctgtcaaaatcatacccaacacctctacagaaaacaaccagaacacgaccacagca
actgtcctctccatggctactactaatggccagcagctcaacatccctttgccagtgatg
aagaatgacctgggaagtatcacggtaatccaggtacaagcaaaccagctgacccccctt
acagcccaggtgctgctcacctccccaaacaaagcccctgaggttcatacacagccaacc
aacaaaccacgccgcacaggatcccttgcactctttttccgcaaggtctatcatttagca
agtgtgcgtctcagagatctatgtctaaagctggacatctctgcagagttaaggggcaaa
atctggacatgctttgagcagtctttggtccactgtacagacatgatgaaggatagacat
ctggatcagctcttgctctgtgcagtctacatcatatccaagatctcaaaagaggagcac
acttttcaagacataatgaaatgttatcggagtcagcctcaagcaagcagccatatatac
cgcagtgtgctgctgaggaagagagtccacgaacagcaaactgatgacacaatggaagtt
gatccaccaacagaacaaaccaatggaaggacagatcaaggtgccaaagctaaggctgac
agcgaatcggacgaggacaggggtgacctcatccaattctacaattctgtttatgttctg
aaaatgaaatcttttgcactcagatatgctcatccagcagctgatagtagagtgaatgcg
ccaccgttatctccattcccctcactgcgagctcagcctctctccccacggcgaatatct
cagagacactccgtctatctgtctccccacaaaaatggatcctgcctcaaacccagctct
gcctacacatacaagttcactggcagcccatctaaggagctgagtgacatcaacctaatg
atccgtcagggaagcatgagcaagaagagagcttttaccatggagggagatgagacagag
tctcccaccaaacgtttgagccaggagagtgaggatgtgctgctcaagcgcctgcaggat
gttgtgactgagagagccaatcactga
DBGET
integrated database retrieval system
