Ictalurus punctatus (channel catfish): 108272707
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Entry
108272707 CDS
T04658
Symbol
arhgef1a
Name
(RefSeq) rho guanine nucleotide exchange factor 1a isoform X1
KO
K12791
Rho guanine nucleotide exchange factor 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108272707 (arhgef1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108272707 (arhgef1a)
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108272707 (arhgef1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
C1_1
PH
SOS1_NGEF_PH
C1_2
BRISC_FAM175B_helical
Prok-RING_1
PHD
PH_13
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
108272707
NCBI-ProteinID:
XP_017336838
Ensembl:
ENSIPUG00000010417
UniProt:
A0A2D0S258
LinkDB
All DBs
Position
12:complement(20341744..20429226)
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AA seq
1148 aa
AA seq
DB search
MGPEEQPHLKDTMSNTPLSSPHPHGCSPAPSAPLPSPPISPARTGVVTFRSPATRHLAHL
DAWRRHSWEPGAALQGNPASDTRSVSLEDLDMEEMALVLGGALGCHRARDTRRSVTCEGS
LSSLTEEEAGIETQSQLCSTLEEQASQMYSCSVSAPSLCVVRRTAKASAPRPRSYCYDNN
AENSLYYQGGGSTQSLDRELSSLHWEAGRETKGESDEDKEEVAGNAFVRTFSFLYKMTSS
RKNKEKERMREREREAREREARYTNGHLFTSLTVSGTTLCSACNKSITAKEALSCPTCNV
TIHNRCRDSLPNCAKMKQRQQKLALMRNSSSYSGTVTLRNKTHLKERPSSAIYPSDSLRQ
SLLGSRRGRSSLLLSKSVSTNNIAGTLSDDSPLGLRRILSQSTDSLNFRSRTMSMESLND
EGEVYYASVLEELEIEGRDFEADSWSMVVDSAYLQTHRKDIIKRQDVIYELIQTELHHVR
TLRIMDGVFRRGMLDEVQLEPGVVHALFPCLEKLLVLHTRFLTQLLNRRLHCLQPDSTHN
FTISRISDLLMQQFSGQCADEMKKTYAEFCSGHLKAVKLYKELLARDKRLQYFIRKVSRG
PLLRRHGFQECILLVTQRITKYPVLVQRILDNTKDNPEEEVGLKQALTLLRDLLNGVEQQ
VLELERTQRLQEIRSRLDPRSQAKMRSDAMFRPAELLRRQLIHEGTLLWKTPSSRLKDVQ
VLLMTDVLVFLQEKDQRYIFASLDKSAVVSLQNLLVRDIANQERGLFLISSEFSPPEMYE
LHAASKDDRNTWIRHIQQAVSRCPSREEFPLIETEDKALLRRLKADIQQKDREVLELLQE
RVTLFSDLAEVMCGQELVLPPNSRNLFRADTPQAPRGEQLLTQAITEVDRLTELLLGSGS
GIPLACTINGHHNCTGALLINGQEVLVNGSQETAASQDGNGNQLEDKTPSEEVSQRLVNL
SAQLHALQGAVIRQDSIVEFCAREGGTSRSRPGRSLSREGTGEVGTAGELALLQRQHSLL
QEELVRLRGAEGRLKDSEKARAQLEKQLRGLKSNSAALGESTGHAQALLHRKGSETDPNT
DTPLASQASMEQTDGQQDGSDIDVDVISDDDDDEDLKVSPRSESPRDLQDIPEESESSAE
AREHASHC
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctgaagagcagccccacctgaaagacacgatgtcaaacactcctctttcctcg
cctcatccccacggctgctctcctgctccttctgctcctctcccctctccacccatctct
ccagcgaggacaggggtcgtgacctttcgctctcctgccacacgccaccttgcccacctc
gatgcctggaggaggcacagctgggagccgggggcagccttgcagggaaacccagccagc
gacacacgcagtgtcagtttggaagatctggacatggaggagatggcattggtactgggt
ggtgctctgggctgccacagagctcgagacacgcgcaggtccgtcacttgtgagggctct
ttgtcctctcttactgaggaggaagctgggattgagacacaatcacagctgtgctcaaca
ctggaggaacaggcaagtcagatgtatagctgcagcgtctcagctccaagcctctgtgtg
gtgagacgcactgccaaagcttctgctcctcggcctcgctcatattgctatgataataat
gcagaaaattccctgtactaccaaggtggaggttcaactcaaagtctagaccgtgagctg
tcctcacttcattgggaggctgggagagagacgaaaggagaaagcgatgaggataaagag
gaggttgcaggcaatgctttcgtccgaacatttagcttcctctacaagatgacctccagt
cggaagaataaggaaaaagagcggatgcgggagagagaacgagaggcgcgagagagggag
gcgcgctacacaaacggccacctctttacctccctcaccgtgagcggcaccactctctgc
tccgcctgcaacaagagcatcaccgccaaggaggccctcagctgccctacctgcaacgtc
accatccacaaccgctgcagagactccctgcccaactgtgccaaaatgaaacagcggcaa
cagaagctggcactgatgcgcaacagctcgtcctacagtggaacagttaccctgcggaat
aagacacatttgaaagagcgtccaagctcagccatctacccctccgatagtctgcgccag
tcactgctgggttcccgccgtggacgctcttccctcctgctgtccaaaagcgtatctact
aataacattgccgggacactgagtgatgactctcccttggggctgcgcaggatcttgtct
caatccacagactcgctaaacttcaggagcagaaccatgtctatggaatcactcaacgat
gagggggaggtatactatgcctcagtgctggaggagctagagatcgaggggcgggacttt
gaggcggactcttggagcatggtggttgactccgcctacctacagactcaccgcaaagat
atcatcaagaggcaggatgtcatctatgagctgatccagacagagctgcatcacgtgcgc
acgctgcgcatcatggatggagttttccggcggggcatgctggacgaggtgcagctggag
ccgggcgtcgttcacgcgcttttcccctgtctggagaagcttcttgtgttacatactcgc
ttcctcacacagctgctcaaccgccggctgcactgcctgcagcctgacagcacacacaac
ttcaccatcagccgcatcagcgacctccttatgcagcagttttcaggtcagtgtgctgat
gagatgaagaagacctacgctgaattctgcagtggtcacttgaaagctgtaaaactgtat
aaagagctactggctagagacaagagactgcagtacttcatccggaaggtgagtcgaggt
cctctgttgcgtcgtcacggtttccaggagtgcattttgctggtcacccaacgcatcact
aagtatcctgtactggtgcagcgcatcctcgacaataccaaggacaatccagaggaggag
gtggggctgaaacaggctctcacactactgcgagatctgttgaacggtgtggaacagcag
gtgctggaactggagcgaacgcagcgactgcaggagatccgctccagactggaccctcgc
tctcaggccaagatgcgctcagacgccatgttcagacctgctgagctcctgcgcagacag
ctcatccatgaaggcacactgctgtggaaaacacccagctccagacttaaggatgttcaa
gttctcctcatgactgatgtactagtgttcctgcaggagaaggatcagagatacatcttt
gccagtttggataagtcggcagtagtttcactacagaacctgttggtcagagacatagcc
aatcaggagcgagggttgttcctcatcagtagtgagttcagcccacctgagatgtacgag
ctgcatgcagcttctaaagatgaccgaaacacctggatacgccacatacagcaagctgtc
agcagatgtccctcaagagaagaattcccactaattgagacagaggacaaggccctgttg
cgaagactcaaagctgatatccagcagaaagacagggaagtcttggagctgctgcaagag
cgagtgacactgttctccgatctggctgaggtcatgtgtggacaagagctcgtgctgcca
cccaactccaggaacctgttcagagctgacacacctcaggcacctcgaggagaacagtta
ctcacacaagccattactgaggtggacagactgactgagctgttgttaggctctggttct
ggcatccccttggcctgcactatcaatggtcaccacaattgcacaggggcgctgttgata
aatggacaggaggtgttagtcaatggttcacaggagacagcagcttctcaggatggaaat
gggaatcagctggaggacaagacaccaagcgaggaagtctctcagcgactggtgaatctc
agcgctcagctccatgcactgcagggtgcagtgattcggcaggactccatcgtagagttt
tgcgcacgtgagggtggtacatctcgaagccgcccggggcggtctctctcacgtgaagga
accggcgaagtggggacagcgggcgagctggcactgcttcagcgccaacacagcctcctg
caggaggagctcgtacgcctcagaggagctgaaggaaggctcaaagacagcgagaaggca
cgtgcccagctcgaaaaacaactacgaggcctgaagtccaacagcgctgcccttggggaa
agcacagggcatgcccaggctctactacatcgcaaagggagtgaaactgacccaaacact
gacacgccactggccagtcaggcgtctatggagcagacagacggtcagcaggacggcagt
gacatagacgtagatgtgatctcagacgatgacgatgatgaagacttgaaggtgtccccc
cgttccgagagtcctagagatttgcaagacattcctgaggagagtgagtcatctgcagaa
gctcgagaacatgcttcacactgctaa
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integrated database retrieval system
