Ictalurus punctatus (channel catfish): 108272881
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Entry
108272881 CDS
T04658
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108272881 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
108272881 (ddx39b)
03015 mRNA surveillance pathway
108272881 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108272881 (ddx39b)
03041 Spliceosome [BR:
ipu03041
]
108272881 (ddx39b)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108272881 (ddx39b)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108272881 (ddx39b)
Spliceosome [BR:
ipu03041
]
Complex C
Other components
EJC/TREX
108272881 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108272881 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
108272881
NCBI-ProteinID:
XP_017337175
Ensembl:
ENSIPUG00000015733
UniProt:
W5UKX3
LinkDB
All DBs
Position
12:complement(26358799..26374196)
Genome browser
AA seq
463 aa
AA seq
DB search
MLMPMVNTREQVKRNSRNKLLHRVNSTMTENDVDNELLDYEEDEVDATGGVGDGGLAGDG
STVALRKEGLKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDV
LCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKV
AVFFGGLPIKKDEETLKRESPHIVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQL
DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY
YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEE
RLARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKG
LAITFVSDEGDARTLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgctaatgccgatggtaaatacgcgcgagcaggtgaagcgaaattcacgaaataaattg
ttgcacagagtgaattcgacaatgactgagaacgacgtggacaacgagctcttagactac
gaggaggatgaggtggatgcgacaggaggtgtcggggacggagggctcgctggagacggc
agcaccgtggccttgaggaaagaaggactgaaaggctcctacgtttccatccactcctca
gggttcagggacttcctgttaaagcctgagctcctcagggccatcgtggactgcggtttc
gagcatccgtccgaagttcagcatgagtgcattccacaagccatcttgggcatggatgtg
ttgtgccaggccaagtcgggtatggggaagacggccgtctttgtcttggcgacactccag
cagctggaaccagtgactggacaggtttcagtgctggtgatgtgccatacccgagagctg
gcattccagatcagcaaagagtacgagcgcttctccaagtacatgcctactgtcaaggtg
gcggtgttctttggcggtttgcctataaagaaggatgaggagacgctgaagagagagagt
cctcacatagtggtgggaacgcctggccgcatcctggctctttcacgcaacaagagtctc
aacctgcgccacatcaaacacttcatcctggacgagtgtgacaagatgctggaacagctt
gacatgcgtcgtgacgttcaggagattttccgcatgaccccgcacgagaagcaggtcatg
atgttcagcgccaccttgagcaaagaaatccggcccgtctgccgaaagttcatgcaagat
cccatggagatatttgtggacgacgagaccaagctgaccctgcacggcctgcagcagtac
tacgtcaagctgaaggacaacgagaagaacaggaaactgtttgatctgctggacgtgctc
gagttcaaccaggtggtaatctttgtgaagtcagtgcagcgctgcatcgctctggcgcag
ctgctggtggagcagaacttccccgccatcgccatccacagagcaatgcctcaggaggag
aggctcgctcgatatcagcagtttaaagactttcagagacgcatcctcgtggccactaac
ctgttcggcagaggaatggacatcgaaagggtcaacatcgcctttaactacgacatgccc
gaggattcagacacgtacctgcacagggtggccagggcgggcaggttcggcacaaaaggt
ctagccatcacgttcgtgtcggatgaaggcgatgcccgaacgctgaacgacgttcaggac
aggttcgaggtgaacatcagcgaacttccagaggagatcgacatctcgtcttacatcgag
cagacgcggtaa
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