Ictalurus punctatus (channel catfish): 108272956
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Entry
108272956 CDS
T04658
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108272956 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108272956 (cnot3b)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108272956 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108272956 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
108272956
NCBI-ProteinID:
XP_053540140
Ensembl:
ENSIPUG00000009046
UniProt:
A0A9F7R7K8
LinkDB
All DBs
Position
12:complement(19661450..19689824)
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AA seq
924 aa
AA seq
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MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTTTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRYHI
RMLETILRMLDNDSVQVDSIRKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDISQPLVA
TSPPTHTEDEIFQHSSPTPTSTTSSSPIPPSPATCTTNSEDDKKRGRSTDSEFSQSPVKN
GNPSSLSSSSSSSSCSGSSSTLVVSLATMASSSISAVGGSSLLSNIGGHVQNSCSYSSAI
QQQMQSKNAINSQSSISASATPSNILLPNPTSTSSPSNISSPSNQAQPPLTPSPASSLSH
ALSLGLAKSSAPTTSSIGQIPGLGLSGMPASRNSMSGPLQSSTPAPYAQAAASGTANATV
NANVTNSSGVQPAGTNGNNASTGLLGSAPGTTGISSAILGLGTTQTAVQPSSLVTPSPVG
GGLVQASSVGVIGSNSGNSTSGNATAVGSSGLPRPPSGQKQNGGTTYSAIVADSTSDSAL
NSASQLQNNQPSSLNSTTNLPKDSGSSLLGSMTLPTSSPSPSYSESNPSGGSLLNGPHSY
TQAADAIKPQEPLSSLKSMAERAAQGSGLEGELSALHLTGVNKVGDWNTGVCNGSDIFPS
STAPSGPPTAPQSSLSEVNIPPSLGVCPLGSVPISKEQHYQHIMQEAAWTHMPHPSDSER
IRYTFIWSSQIHMANCSRLVSPTIMLQYLMRNPCPTLPFHHQVPPPHTDCVDFYQRLSTE
TLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY
EKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaactacaaggtgaaattgatcgatgtctaaaaaaagtcactgaa
ggagtagaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgccaaccaa
aaagagaagtatgaggctgacctcaagaaagagataaaaaaattacagcgcctccgagac
cagattaagacgtgggtggcttcaaacgagatcaaagacaaaaggcagctagtggacaac
cgcaaactcatagagacacaaatggagcgctttaaaattgtggagcgagagacaaaaacg
aaagcgtactccaaagagggactcggccttgctcagaaagtagaccctgcacaaaaagag
aaagaggaggttggacagtggctaacgacaacgatagacacgttaaacatgcaggtggac
cagtttgaaagtgaggtggaatcactttcagtccagacacggaaaaagaaaggagacaaa
gagaagcaggatcggatagacgagctgaaaaggttgattgagaggcaccgctaccacatt
cgtatgctggagaccattttgcgaatgctagataacgactcggtacaggtggattccatc
cgcaaaatcaaggacgacgtggagtactacattgattcttctcaggatcctgactttgag
gagaatgaattcctctacgatgatctggacctggaggatatatcccagccattggtcgcc
acatctcctccaactcacacggaggatgaaatcttccagcactccagtcccacaccgaca
tccaccacttcatcttccccaattcctccatccccagctacttgcactacaaattctgaa
gatgataagaagcgaggtcgttccacagatagtgaattcagtcagtctccagtaaagaat
ggcaatccatcatctctttcctcatcctcgtcatcctcgtcatgttcgggatcctcttct
accttagtggtgtctttggcgaccatggcaagcagcagcatctcggcagtcgggggcagc
agcctcctgagcaatataggaggccatgtacaaaactcatgcagctacagttccgccatc
cagcagcaaatgcagtccaaaaatgccatcaactcccaatccagcatctctgcctcagca
actccctcaaatatcctcttacccaaccctacatcaacctcttctccttctaatatcagt
tcaccaagcaaccaggcccagcctccgctcactccaagtccagcttccagcctgagccat
gctcttagcctgggcctagccaagagtagtgcgccaaccaccagtagcattggccagatt
cctggccttggcctttcagggatgccagcatccaggaacagcatgtcagggcccctgcaa
agttccaccccagcaccatacgcccaggccgctgcatccggtactgccaatgccacagtt
aatgccaatgtcacaaactccagtggagtacaaccagctggcacaaatggaaacaatgct
tcaacaggtctcttggggtcagcaccaggcactacagggatcagcagtgcaatcttaggt
ctgggaaccacacagactgcagtgcagccctcgtccttggtgacgcccagccctgttgga
ggaggactggtgcaggcgagcagcgtgggcgttattgggagtaacagtggaaactctaca
tcaggaaatgcaacagctgtgggcagttctgggcttccaaggccacctagtgggcagaaa
cagaatggaggcacaacctacagtgccatagtagcagatagcacatctgattctgccctc
aacagtgccagccagttacaaaataaccaaccctcatccttaaattccacaaccaatctg
cctaaggacagtgggtccagccttctggggtctatgactcttcctaccagttcaccatcg
ccctcgtatagtgagagtaatccgagtgggggcagcttgttgaatggacctcactcctac
acacaagcggctgatgccatcaagcctcaggaaccgctcagttctctaaaatcgatggca
gagagagcggctcagggctcaggtttagagggagaactctctgcgctacatctcactgga
gtaaacaaagttggagattggaatacaggagtgtgcaatggttcagatatcttccctagt
tccactgctccgtcaggtccccctacagccccccagtcttctctttcagaggttaacatt
cctccatcactgggtgtctgtcctctgggttctgtccccatctccaaagagcagcactac
cagcacattatgcaagaggcagcctggacacacatgccccacccgtcagactccgagagg
atcaggtatacattcatctggtcttcacagatacacatggcaaactgctccaggcttgtg
tctccaacgataatgctgcagtacctgatgaggaatccctgtcctaccttgcctttccat
caccaggtgccaccaccacacacagactgtgtggacttctaccagaggctgtctacagag
actctcttcttcattttctactaccttgagggcacaaaggctcagtatttggcagccaaa
gctttgaaaaagcagtcgtggaggttccacacaaagtacatgatgtggttccagaggcac
gaggagcctaagaccatcactgatgagtttgagcaggggacatacatctactttgactac
gagaagtggggccagaggaagaaagaaggattcacgtttgagtacaggtatcttgaggac
cgggacctccagtga
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