Ictalurus punctatus (channel catfish): 108273088
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Entry
108273088 CDS
T04658
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108273088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108273088
Membrane trafficking [BR:
ipu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108273088
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Motif
Other DBs
NCBI-GeneID:
108273088
NCBI-ProteinID:
XP_017337575
Ensembl:
ENSIPUG00000012271
UniProt:
A0A2D0S5S6
LinkDB
All DBs
Position
12:7796279..7825702
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AA seq
873 aa
AA seq
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MYVKSSMSVKAFELVPAVEREQLAGEKTRIGVECIECCGQHLYVGTNDGFIHHFLLEERT
TAKGQLSFSSQKLLHKQLGLKKPPSELKAASALERLIVLCDGVILLVDMVTLEPVASGGT
KLKGVTVFCVNENPVTAEPFCVEMAVASARRRAVHICTVHEDRVQILREVATPDQPCDLS
LDGYFLCLALPTRYVILNYGSGASQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFVN
SEGISQRAPVKWSENVIGAAVCFPYVVALDESFVTVHSMLDQQLKQTLSFSEGHILQDFE
GKVVLASTKAVYVLVPLPLERQIQDLLAGRRVEEALTLTEGAQRNIPKDKFQILHKRILQ
QAGFIQFGQLQFSEAKEHFRKGQLDVRELISLCPLLLPASSSFTRCHPPLHEFADLNHLT
QGDQEKVQSCKRFLISYLREVRASESANGFRQDVDTALLKLYAEAGHEGLLELLASDNSC
LLADSAPWLEKHHRYFALGLLHHYNGQDAAALQLWVRVVNGDLQDSTHADLFEYVVDFLS
SCKNLDLVWKYADWALQKDQKLGVRIFTKRPVSKEQTRQLNPDEVITYLQKHSQALVLYL
EHVVLERRLQKEKYHTHLAVLYADRVLALVSRTSATEDQLSSARQKLQRLLRESNLYRVQ
LLLGKLQDSELLLMERATLHGKLEEHDKALHILVHQLKNSAAAQEYCTWATAAHDHKNRG
EIFHQLLRVYLDPDVPGGPRTVEAVDLLNHHAEVFDAPKVLELLPESWSLPLLRPFLCGA
VRASMHARHTSQIALGLARAENLQLHHDRLKHRGGPILVSGKKGCHLCHNTFSEPDCVCL
PGGKPVHTQCATQKLKGSPTKRQVDHAHTSNHT
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgaaaagcagcatgagcgtgaaggccttcgagctggtgcccgctgtggagcgg
gagcagttggctggcgagaagacgcgcatcggtgttgagtgcatcgaatgctgtggccag
cacctgtacgtgggcaccaacgatggcttcatccatcacttcctgctggaggagcgcacc
acagctaaaggccagctatccttcagctcgcagaagctcctacacaaacagctaggcctc
aagaagccgccgtccgagctaaaagctgcctcggccctggagcgcctgatcgtcttgtgc
gacggtgtcatcttgctggtggatatggtcacactggaaccggtggcatctggagggacc
aaacttaaaggcgtgactgtgttctgtgttaacgagaaccctgtgacggccgagcctttc
tgcgtggagatggcggtggcgtctgcacggcgccgcgctgtacacatttgcaccgtgcac
gaggatcgtgtgcagatcctgagggaagtggccactcccgatcagccatgcgatctcagc
ctggacggctacttcctgtgcctggctcttcccacacggtatgtgatcctgaactatggc
tcaggtgcctcgcaggatctattcccctatgacagcgaggagaggaaacccattgtcaaa
aggattggcagggaggagtttctcctggctgcgccaggtggcctcggcatgtttgttaac
tctgagggcatctcccagcgtgccccagtcaagtggtcggagaacgtgattggcgcagcc
gtgtgcttcccgtacgtggtggctctggacgagagctttgtaacggttcacagcatgctg
gatcagcagctcaagcagacgctgtcattcagtgaaggacacatcctgcaggactttgaa
ggcaaagtggtgttggcttccacaaaggcagtgtatgtgctggtgcctctgcctctggaa
cgacagatccaggacctgttggcaggacgtcgagtggaggaggcgctgaccctgaccgaa
ggtgcacagagaaacattcctaaagacaagttccagatattacacaaaagaattctccag
caggcgggattcatccagtttggccagcttcagttttctgaagctaaagagcattttagg
aaggggcagctagacgtacgcgagctgatctcactgtgcccgctgctgctgcctgcctca
tcgtcgttcacacggtgccatccgccactgcacgagttcgccgatctgaaccatctgacg
cagggtgatcaggagaaagtgcagtcctgcaagcgcttcctcatcagctacctgcgtgag
gtgcgtgctagcgagagtgccaatggcttcagacaggatgtagacactgcactgctgaag
ctctacgccgaggcaggtcacgaaggcttgctggagctgctggcctctgacaactcttgc
ctgctggccgacagcgcaccctggctggagaaacaccacaggtactttgctctcgggctc
ctgcatcactacaacggccaggatgccgcggctctacagttgtgggttcgagttgtcaat
ggggacctccaggactccacacatgctgatctgtttgagtatgttgtggatttcctgagt
tcctgcaagaacctggacctcgtatggaagtatgcagactgggctttacagaaggaccag
aagcttggagtacggatcttcaccaagagacctgtttccaaagagcagaccaggcagctg
aatccagacgaagtgatcacgtacctacagaagcacagccaggctctagttctgtacttg
gaacatgtggttctagagaggaggttacagaaagagaagtaccacacacacctagctgta
ctgtatgccgaccgagtgctcgctctcgtctctcgaacctcagccacggaggatcagctc
tcttcagcccgacagaaactgcagcgactgttaagagaatccaacctgtacagagtccag
ctgctactgggtaaactccaagactctgagctgctcttaatggagagagcgacactacat
ggtaagctggaggagcacgataaagcactacatatcttggtgcaccagctgaagaactct
gcagccgcacaggaatattgcacatgggcaactgcggctcacgatcacaaaaaccgtggg
gaaattttccatcagctgctgcgtgtttatttggacccggacgtacccggagggccgcgg
actgtggaggctgtggacttgctgaaccaccacgctgaggtttttgatgccccaaaggtt
ttggaacttctccccgagtcgtggtctctacctttgctccgccccttcctgtgtggggct
gtgagagccagcatgcacgctcgccacacctcccagatcgcactggggctcgcgcgagct
gagaatctgcagctgcaccatgacaggctgaagcatcgcggcggtccaatcctggtgtcg
ggaaaaaagggatgccacctgtgccacaacactttcagcgagccagactgcgtgtgcctc
ccgggtggcaagcccgtccacacacagtgtgccacccagaagcttaagggctcacccaca
aagcgacaagtagaccacgcccacaccagcaatcatacatga
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