Ictalurus punctatus (channel catfish): 108273195
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Entry
108273195 CDS
T04658
Symbol
snx27a
Name
(RefSeq) sorting nexin-27a
KO
K17936
sorting nexin-27
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108273195 (snx27a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108273195 (snx27a)
Membrane trafficking [BR:
ipu04131
]
Protein recycling
Others
Others
108273195 (snx27a)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
108273195 (snx27a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
PDZ_6
RA
SNX17-27-31_F1_FERM
RA_2
VirE3
SNX17_FERM_C
PDZ_2
SNX17-31_F2_FERM
USP7_C2
RBD
DarA_N
Motif
Other DBs
NCBI-GeneID:
108273195
NCBI-ProteinID:
XP_017337785
Ensembl:
ENSIPUG00000007587
UniProt:
W5U9N7
LinkDB
All DBs
Position
12:complement(18539308..18559885)
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AA seq
557 aa
AA seq
DB search
MAEVEGEEIRGAPPCPVTLPAASRNGSGGQMLTAGPRIVRIIKSESGYGFNVRGQVSEGG
QLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVSVEGATHKQVVDLIRTGE
KELVLAVLSVPPQEVDGLDSGEDGSASPNYDFSDKQAVPVSIPTYKHVEQHGERFVVYNI
YISGRQLCSKRYREFSILHQNLKREFASYTFPKLPGKWPFSLSDQQLDARRRGLEEYLEK
VCSVRVIGESDIMQEFLSESDENYNGVTDVELRIALPDKTTISVRVRKNSTTDQVYQALV
MKVGMDSIMASYFALFEVINHTFVRKLASNEFPHKLYVQNYTSAVPGTCLALRKWLFSIE
EQELLQENPLALHYCFHQAQDDVKKGFIKAEDKSYQLQKLAEQRKMATYLNLLRTCEGYN
EVAFPHCSCDSRRRGHVIAAVSIHHFKLHACTEDGTIENQVIAFEWSEMQRWDTDEEGMA
FCFEYVRGEKKPRWVKIFTPYFNYMHECFERIFYELSWRKEVEEEASDKDNKNCNEYLPP
LEQQKGWHHLGKEIITS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtcgaaggagaagagattcgtggcgctcctccgtgcccggtaacgttaccc
gcggcgtctcgaaacggctccgggggtcagatgctaacggcgggaccacgcatcgttcgg
attattaagtcggagtcgggctacgggtttaacgtccgcggtcaggttagcgaaggcggc
cagctgcgcagcattaacggcgagctgtacgcacctctgcagcacgtcagcgccgtgtta
cccgggggggcggcggaccgagccgggatatccaaaggagaccgaatcctggaggtgaat
ggcgtgagcgtggagggcgctacacataagcaagtggtggatctgattcgcactggagag
aaagagctggtgcttgctgtcctgtctgtgccaccacaggaagtagatggtctcgactct
ggagaggatggctcagcttctcctaattatgacttcagtgacaagcaggctgtgcccgtc
tccatccccacctacaagcatgtggagcagcatggagaaagatttgttgtatataatatc
tatatatctggcagacagttatgctcaaagcgctaccgggaattttccattctgcaccaa
aacctgaagagagagtttgcctcctacacatttcccaaacttccagggaaatggcctttc
tctctctctgaccaacagttggatgcccgtaggagaggcctggaggaatacttggaaaaa
gtgtgttcagtgagggtcattggagaaagtgacattatgcaagagttcctctccgagtca
gatgagaactataatggtgtgaccgatgtggagttgcgaattgcactgccagataagacc
accatttcagttcgagtgcgtaaaaacagcaccactgaccaagtctaccaggccctagtg
atgaaggttggcatggacagcatcatggccagttactttgccctttttgaagtgataaac
catacctttgttcgtaaattggcctctaatgagttcccccacaagctctatgtgcagaac
tacacgtcggcagtgccaggaacctgtctggccctacgcaagtggctcttcagcatagag
gagcaagagcttctccaggaaaatcctctagctctgcattactgcttccaccaggctcag
gatgatgtgaagaagggattcatcaaagcagaggataagtcctatcagcttcagaagcta
gccgagcagagaaagatggccacgtatctgaatttgctacgcacatgtgagggctataat
gaagttgcgttcccccattgctcgtgtgattcacggaggagaggtcatgtgattgctgct
gtcagcattcaccacttcaaacttcacgcttgcactgaagatggaacgatagagaaccag
gttatagctttcgaatggtctgagatgcagaggtgggacacggacgaggagggaatggct
ttctgctttgaatatgtacgaggggagaaaaagcctcgctgggtcaaaatcttcactcct
tattttaactacatgcatgagtgctttgagaggattttctatgagctcagctggaggaaa
gaggtggaagaggaggcgtccgacaaagacaacaagaattgcaatgagtacctccctcct
ttggaacaacagaagggatggcatcacctagggaaagaaatcatcacctcttag
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integrated database retrieval system
