Ictalurus punctatus (channel catfish): 108273198
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Entry
108273198 CDS
T04658
Symbol
als2b
Name
(RefSeq) alsin isoform X1
KO
K04575
amyotrophic lateral sclerosis 2 protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108273198 (als2b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
108273198 (als2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
MORN
RCC1_2
VPS9
RhoGEF
PH
DUF4005
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
108273198
NCBI-ProteinID:
XP_017337789
Ensembl:
ENSIPUG00000020848
UniProt:
A0A2D0S4V0
LinkDB
All DBs
Position
12:13353005..13378104
Genome browser
AA seq
1700 aa
AA seq
DB search
MDKLKSLGEEESSQVRGVLHTWRGYSYSVTPEKVLLSRPVLQAALGAKHGVLLLEGGQVY
SFGELPWKQNPSSLKTTDPILEAGLSEKHVVYVSAGMFHNGAVTEDGAVHMWGDNTYGQC
GLSGLSVVPNPTPVGVVASETTPSRPVRIVEMACGEQHTLALSVEHEVWSWGSGCQLGLH
VSSFPVWKPQKVEHLAGRHVLQVACGASHSLALVRCPPPPHESRRPPEDKCGQCNQLLYT
MTDKEDHVIISDSHYCPLGVELDGDDNNKSASEHGLVHGTPSSRGKMKSSPSEPVLMTHT
QSPKSIFPSMSSPVQAPSPVPESQDQVQIAGEVFVQSDSKDLKESQDPVTNGEVFEAATE
PSTHERENSNATQWLTGTGTKSSQYPDEQALKDYLKRLSAQTLAEQAAKSPSTAQCAQPL
TEPAVVFTLDPSTPVAQSVTPMGSALNNLVVSYASAVGERVASTYEALSLRKVISYWGPG
EERVRQEEHKQGKKSSSLGDIREEEAEGLSRRLSLPGLLSQGTCALHILYHHMLSPRLLR
RVSRPRDHAVALTPAGVAESDARLPSLQTEVWSWGRGQEGQLGHGDVLPRLQPLCIKSLS
GKEVVRVAAGALHSLALTAQSQVYSWGSNSFGQLGHMESPSTIPHLAKLSEGIRAWDIAA
GQHHTLLLADGDCLQPILYYSGQQVKEGSGETAEEESGGYTQQPVLLPFCMNLGYVSSVS
AGGQVCAAMADRNVVGLIASLHELAAAERKYYCKLTNIKSLLLQPLLKLESLSSVLGPSC
TGLLQNLIGRFSRLSQFTGQNSAALTSFLRRSRDLRGLVLLDNAHLFPDSYSEFCAAVGN
MLVMGGFQALVKPCQDVFGKGAETVQKLSECSEDGAMLADVLAHLFYLPIRHLHEYSHLL
LKLTSCYNPSCADYQKLQEAYQKYEALAVHLKRKRKEAEYTLHFWRSFPGKMTDSLRKPS
RRLVCESSNKALTLQNAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWVEPMSDENAGL
YGLKLTSPEESFMLLASSPSEKAKWLRAINQAVEQALSGVGSYTVPPTSGTGLRADPPIS
RTASYTFYKDSRLKDAMYEGRWVAGKPHGRGVLKWPDGRMYTGTFKNGLEDGFGDYILPN
KNLNNSDYYQGHWKDGKMHGFGTFRYATGEVYEGSFQDNMRHGHGMLRSGKLNSTSPSVF
IGQWVNDKKTGYGVFDDITRGEKYMGLWQDDQKQGNGVIVTQFGLYYEGAFSNNKMMGTG
VLLSEDDTTFEGDFSEDWTLNGKGTLTMPNGDYIEGSISGVWGTSLKISGSYYKPNLYDS
EKDKSRALKLGRFSVHPEEKWKAVFGECWSRLGCDTAGQGETRMAWDNIAIALTTNRRQH
RDSPELLSRSHNKTLESLEFIPQHDGPVTLEKYDIIRRYLIKACDTPLHPLGHLVETLVA
VYRMTYVGVGANRRLLQQAVNEIKSYLSRIFQIVRFLFPDLPEEGGLLAEAPNEKKESKS
SSSDLESPKPGRVVSSSALLLPVLLPRLYPPLFTLYALDKEKEDDVYWDCVLRLNKQPDL
ALLAFLGVQQKFWPVAVTAHEEQQQVLPSTKDACFASAVETLQQISTTFTPSDKLQVIQL
TFEEITQEVLTLLKQDFLWSMDDLFPVFLYVVLRARIRNLGSEVSLIEDLMDPCVQHGEH
GIMFTTLKACYYQIQHEKIT
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggataagctgaagagtttgggtgaggaggaaagctctcaggtgcgaggagtgctgcat
acatggagaggttactcctacagtgtcactccagagaaagtgctcctctctcggcccgtg
ctccaggctgccctcggggctaaacacggagttctgctgttggagggtgggcaggtatac
agttttggcgagttaccgtggaaacagaacccatcatctctgaaaacgacagaccctatt
ctggaggcggggctcagcgagaagcatgtggtttacgtgtcagcggggatgttccacaac
ggggcggtgacggaagatggagccgtgcacatgtggggggacaatacttatggccagtgc
ggtctttcaggactctcagtcgtccccaatcccacgccggtgggcgtggtggccagtgag
accacgccctctcggccagtcaggattgtagagatggcatgcggtgaacagcacacgctg
gcactttcagttgagcatgaggtgtggtcatggggcagcggctgccagttaggtttgcat
gtctcgtctttccctgtctggaagccgcagaaagtggagcaccttgccgggaggcatgtg
ctgcaggtggcatgtggcgcctcgcacagccttgcgcttgtgcgctgtccacctcctcct
cacgagtcccgaagacctcctgaggacaagtgcgggcagtgcaatcaattactttacacc
atgaccgacaaggaggatcacgtcatcatctcagacagccactactgccccctgggggtg
gaactcgacggtgacgacaacaacaaatctgcttcggagcatggcctagttcacggaact
cctagttcaaggggcaagatgaaaagttccccatctgaaccggttttaatgacacacacc
cagagccccaagtccatctttccttccatgtctagccctgtccaagcacctagtcctgtt
cctgaatctcaggatcaggttcagattgcaggggaagtgtttgttcagtcagactctaaa
gacctgaaggaatctcaagatccggtgactaacggtgaggtgtttgaagcagccacggag
ccaagcactcatgagagggagaactcaaatgctacccaatggttgaccgggacaggcacc
aaatcctctcaatacccagacgagcaggcactcaaggattacctgaagaggctttcggct
cagacgctggctgagcaggctgctaagagcccgagtacagctcagtgtgcacagcctctc
accgagcccgctgttgttttcaccttggacccctcaacccccgtggcacagtcagtcacc
ccaatgggctctgcactgaacaacctggtggtctcgtatgcgtcagctgtaggggagaga
gtcgcttccacgtacgaggccctctctctgaggaaggtgatcagctactggggtccaggt
gaggagagagtgcgtcaggaggagcacaaacaaggcaagaaaagctcgagtctgggggac
atccgcgaagaggaggcggaggggctgagtcgccgtctctcgctccctggcttgctctca
cagggtacatgcgctctccatatcttataccaccacatgctgtccccacgtctcttacgg
agggtgagtcgcccacgtgaccacgctgttgccctcaccccagctggcgtggctgaatca
gacgcccgcttgccctctctgcagacggaggtgtggagctgggggcggggtcaggagggg
cagctcggacacggagatgtcctgcctagactgcagccgttgtgtattaagagtctgagt
ggcaaagaggtagtgagagtggctgcaggtgccctccactcactggccctgactgcccaa
tcacaggtgtactcctggggcagtaacagctttggtcaactggggcacatggaatccccc
agcaccatccctcatctagccaagttgtcagaggggattcgtgcatgggacatagcagca
ggacagcatcacactctcctattggctgacggagactgccttcagccaatcctctactac
agcggccagcaggtgaaggagggatccggtgagacggccgaggaggagagcgggggttac
acacagcaacccgtacttctgcccttctgcatgaacctgggctacgtgagcagtgtgagt
gcgggtggacaggtgtgtgcagcgatggccgaccgcaacgtggtgggtttaatcgccagt
ctgcacgagctggcagcagccgagagaaagtactactgcaaactgacgaacatcaagagc
ctgcttctgcagccactgcttaaactggaatctttaagctctgtgctgggaccctcatgc
actggactcctccagaacctgattggtcgattcagccgcctatcacagttcacgggtcag
aactcggcagccttgacctccttcctgcggcgctcgcgtgatctcagaggcctggttctc
cttgacaacgcacatctgttcccggactcgtattctgagttctgtgctgcagtgggaaac
atgctggtcatgggtggctttcaggctcttgttaaaccttgccaggatgtgttcgggaag
ggtgcagagacggtccagaaactgtccgagtgttcggaagacggtgcgatgctggccgac
gttctggctcatctgttttaccttcccatccgccatctccacgagtacagccacctgttg
ctcaaactaacatcgtgctacaatccgagctgtgcggactatcagaagctgcaggaggcc
tatcagaagtacgaggctctggctgttcatcttaagaggaagaggaaggaggcggagtac
acgctgcacttctggaggagctttcctggaaagatgaccgactcgctgcgtaagccgtct
cgccgcttggtgtgcgagagcagcaacaaagccctgaccttgcagaacgccggacgcttc
tccgtcaactggttcatccttttcaatgatgctcttgttcacgctcagttctccacccat
cacgtcttcccgttggccacgctgtgggtggagccaatgtctgacgagaacgctggcctg
tacgggttgaagttgacctcacctgaggaaagcttcatgctgctggcttcctcgccatcc
gaaaaggcgaagtggttgcgtgccataaatcaggcagtggagcaggcactaagtggagtg
gggtcatacacagtccctcctacctccgggacgggattgagagcagacccgcccatttcc
cgtactgcctcctacaccttctataaggacagcaggttgaaggacgcgatgtacgagggc
cgctgggtggcaggcaaaccccacgggaggggcgtgttaaaatggccagatggaaggatg
tacaccgggacgtttaagaatggactcgaggatgggtttggcgactatattcttcctaac
aagaaccttaacaacagtgattattaccagggccactggaaggatggcaagatgcacgga
tttgggaccttcaggtatgccacaggagaagtgtacgagggctcgtttcaggataacatg
cgtcacggccatggcatgctgagaagcggcaagctcaactccacctcccccagcgtcttc
atcggccagtgggtgaacgacaagaaaactggctacggcgtgtttgatgacatcacaaga
ggagagaagtacatgggtttatggcaggatgatcagaagcaggggaacggcgttatcgtc
acgcagtttggtctctactacgagggagctttcagcaacaataaaatgatggggacaggt
gttttactttcggaagacgacaccacgttcgagggggatttctcagaagactggactctt
aatggaaaaggtactctgacgatgcctaatggagactacatcgagggttccatcagcgga
gtgtggggaaccagcctgaagatatcggggtcctactacaaaccaaacctgtatgactca
gagaaggacaagagccgggcgcttaaactgggtcggttttccgtgcaccctgaggagaag
tggaaggcggtgtttggggagtgctggagccgcctgggatgtgacacagcgggacaggga
gagaccaggatggcctgggacaacatcgctatagcgctgaccactaacaggagacagcac
agggacagtcctgagctgctgagtcgttcccacaataaaactctggagagcctggagttc
atccctcagcatgacgggcctgttacgttggagaaatatgacatcattcgccgctacctc
atcaaggcgtgtgacacaccgctgcacccactggggcacttggtggagacgttggtagcc
gtgtaccgaatgacgtacgtgggcgtcggagcaaaccgcaggctgctgcagcaggccgtc
aacgagatcaaatcctacctcagccgcatctttcagatcgtcaggtttctgtttcctgat
cttccagaggaaggtgggttgctggctgaggcgccgaacgaaaagaaggaatcaaagtca
tctagcagtgacctcgagtctccaaaaccagggcgtgtggtcagtagctccgccctgctc
ctgcccgtcttgctgccgcgtctctacccgcctctcttcacgctgtacgctctggacaag
gagaaagaagacgacgtgtactgggactgcgtgttgcgtcttaacaagcagcccgacctc
gcgcttctcgcctttttgggagtgcaacagaaattctggcctgtggccgtcacagcacac
gaagaacagcaacaggtcctacccagcactaaagatgcttgttttgcttcagctgtggag
acactacagcaaattagcacgacattcactccctcggacaagctgcaggtcatccagttg
accttcgaggagataacccaggaggtgcttaccttactcaaacaggacttcctgtggtcc
atggacgacctgtttcctgtttttctctacgtggtgctgcgtgctcgaattaggaacttg
gggtcagaggtcagtctgatcgaggacctcatggacccgtgtgtgcagcacggagagcac
ggaatcatgttcaccacattaaaggcgtgttattatcaaattcagcatgagaagatcaca
taa
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integrated database retrieval system