Ictalurus punctatus (channel catfish): 108273398
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Entry
108273398 CDS
T04658
Symbol
sox9a
Name
(RefSeq) transcription factor SOX-9a
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108273398 (sox9a)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108273398 (sox9a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108273398
NCBI-ProteinID:
XP_047015549
Ensembl:
ENSIPUG00000011581
UniProt:
A0A979F6L4
LinkDB
All DBs
Position
13:5814897..5818649
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AA seq
449 aa
AA seq
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MNLLDPYLKMTDEQEKDAPSPSMSEDSASSPSGSGSCSDVESGGGRARDNGVELKKDVDD
EHENSEKFPQCIREAVSQVLKGYDWTLVPVPVRVHGASKNKPHVKRPMNAFMVWAQAARR
KLADQYPHLHNAELSKTLGKLWRLLNDVEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKS
AKNGQGEGEEGAEHTHVSTNAIFKALQQADSPASSMGEVHSPSEQSGQSQGPPTPPTTPK
IDAQTGKSEPKCEGRPLPDGIGVTVGSGGQRQLNIDFRDVDLGELSSDVISHMESFDVAE
FDQYLPPNGHPGHGWMGSAPTGWMAKSPSSSPQVGAASPGEDQSQQRTTHIKTEQLSPTH
YGSFNLQHYTTSTSSSAFPSCINRPQYDYTDQQGSATSYYSAGQSSIYSTFNYMSPSQRP
MYTPITETQSGHSPQHWDQQPVYTQLSRP
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctcgacccctacctcaagatgacggatgagcaagagaaggacgcaccgagt
ccgagcatgtccgaggattcggcgagttctcctagcggctcgggttcgtgctcggacgtg
gagagcggcggtgggcgcgcgcgcgataatggtgtcgagctgaaaaaggacgtggacgac
gagcacgagaacagtgagaagttcccgcagtgcatccgcgaggccgtgtcgcaggtgctc
aagggctacgactggacgctcgtgcctgtaccggtgcgcgtgcacggcgccagcaaaaac
aagccacacgtgaaaaggcccatgaacgcgttcatggtgtgggcgcaggccgcgcgccgc
aaactcgcagatcagtatcctcatctgcacaacgccgagctgagcaagaccctgggcaag
ttatggagattgttgaacgatgtggagaagcgtccattcgtagaagaggctgagcgcctg
cgtgtgcagcacaagaaggatcacccggactacaagtaccagccacggcgaaggaaatca
gccaagaatggtcagggcgagggggaagagggtgctgagcacacacacgtctccaccaat
gccatcttcaaggcactgcagcaggccgattctccagcatccagcatgggagaggtgcac
tcccccagcgagcagtcaggccagtctcagggtcccccgactccgcccactacccccaaa
attgacgctcagacaggcaaaagtgagccaaaatgcgagggccgcccactcccggatggc
atcggagtaactgttggctctggcgggcagcgtcagcttaacatcgacttccgtgacgtg
gacctgggtgaactgagcagcgacgtcatctcacacatggagagctttgacgtggccgag
tttgaccagtacctgccacctaacgggcaccccgggcacggctggatgggctcagcgccc
accggttggatggccaagagcccgagctccagccctcaggtgggtgctgcaagccctggt
gaggatcagagccaacagaggacaacgcacatcaaaaccgagcagctgagtcctacccat
tatggctcctttaacctgcagcactacaccacttccacttcatcctctgccttcccatca
tgcatcaaccggccacagtatgactacaccgaccaacaaggcagcgccacctcctattac
tcagcaggccagagctcgatttactccacctttaactacatgagtcccagccagaggccc
atgtacacccccatcaccgagacccaatcaggccacagcccccagcactgggaccagcag
cctgtctacacacagctctccagaccatga
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