Ictalurus punctatus (channel catfish): 108273575
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Entry
108273575 CDS
T04658
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108273575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108273575
03036 Chromosome and associated proteins [BR:
ipu03036
]
108273575
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108273575
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108273575
PBAF complex
108273575
GBAF(ncBAF) complex
108273575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
108273575
NCBI-ProteinID:
XP_017338372
Ensembl:
ENSIPUG00000017435
UniProt:
W5UCS0
LinkDB
All DBs
Position
13:complement(1458446..1469651)
Genome browser
AA seq
498 aa
AA seq
DB search
MASRAAFPATPGAPVMNTGMNSPGHPRMAAMNPAYRAMPNPANQYPRPGVPPGRNMPMGG
MGSMGSPMPGPSYGGTMTVRPGMPQTAMDPARKRLLQQQHQQQAGGMMGPRRGLKRRKMA
DKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRKLRIYISNT
CTPAKPEGEESEKVASWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKELYGPDNHLVE
WHRMPTTQETDGFQVKRPGDVSVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASIMQ
ALWLYIKNNKLQDCHEKEYINCNRYFRQIFTCSRMRFSEIPMKLAGLLQLPDPIVINHVI
SVDPNDQKKTACFDIDVEVDDPLKSQMSSFLSSTTNQQEIAALEMKIHETIESINQLKTQ
RDFMLSFSNNPQDFIQDWLKSQSRDLKLMTDTAGNPEEERRSDFYQAPWIQEAVGRYVFS
KVQQRRQELEQVLGIRLT
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccagagcggcgttccctgctacaccgggcgccccggtgatgaataccgggatg
aactctcccggccacccgcggatggcagcgatgaatccggcctaccgagcaatgcccaac
ccggctaaccagtatccgcgtcctggtgtccctcctggccgtaacatgcccatgggaggg
atgggttccatgggttctccgatgcccgggccgtcgtacggcggcaccatgaccgttcgt
cccggcatgccccaaactgccatggacccggcgcgcaagagactcctgcagcaacagcat
cagcagcaggcgggggggatgatgggtcctcggagagggctgaaacggcgcaaaatggct
gacaaagttctaccccagaggatccgggacctggttcctgagtctcaggcctacatggac
cttctggcgtttgagaggaagctggaccaaaccattgctcgcaagcgcatggagatccag
gaggccatcaagaagcccatcacgcaaaagcgtaagctgaggatctatatctcaaacacc
tgcacacctgccaaacctgagggggaggagtcagagaaagtggcatcatgggagcttaga
gtggagggcaaactcctggaggatcctgggaaacagaagagaaagttttcttccttcttc
aaaagtctggtcattgagctggataaggagctgtatggtccagacaaccacctggtggag
tggcacaggatgcccaccactcaggagacggacggctttcaggtgaagcggcccggagac
gtgagtgtgaagtgcacactgttgctcatgctggaccatcagccgccgcagtacaaactg
gacccgcggttagcacgtctcctgggcgtccacacgcagacccgagccagcatcatgcag
gcgctctggctctacatcaagaacaacaagctgcaggactgccacgagaaagaatacatc
aactgtaaccgctacttccgacagatcttcacctgctccagaatgaggttctcggagatc
cccatgaagctggcgggactcctgcagctcccggatcccatcgtcatcaaccacgtcatc
agcgtggaccctaacgaccaaaagaagacggcgtgcttcgacatcgacgtagaagtggac
gatccgctgaagagccagatgagcagcttcctgtcctccaccaccaaccagcaggaaatc
gcagccctggagatgaagatccatgagaccattgagtcgataaaccagctgaaaacgcag
cgggacttcatgctgagcttcagcaacaacccccaggacttcatccaggactggctcaag
tctcagagccgagacctcaagctgatgactgacactgccgggaacccagaggaggaaagg
aggagcgatttctaccaggctccctggatccaggaggccgtgggccgctacgtattctcc
aaggtccagcagaggagacaggagctggagcaggtcctcggtatccgcctcacctaa
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