Ictalurus punctatus (channel catfish): 108273592
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Entry
108273592 CDS
T04658
Symbol
valopb
Name
(RefSeq) vertebrate ancient long opsin b
KO
K04256
c-opsin
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108273592 (valopb)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ipu04030
]
108273592 (valopb)
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108273592 (valopb)
G protein-coupled receptors [BR:
ipu04030
]
Rhodopsin family
Vision
Opsin
108273592 (valopb)
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Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srw
7TM_GPCR_Srsx
7tm_4
7TM_GPCR_Srv
Motif
Other DBs
NCBI-GeneID:
108273592
NCBI-ProteinID:
XP_017338414
UniProt:
A0A2D0S861
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Position
13:14473522..14482088
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AA seq
400 aa
AA seq
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MSSAVSMDAFLSSVNGSHTDAPEVATPRDPFAGPLDSVAPWNYTLIACLMFAVTSLSLAE
NSTVMIVTYKFKQLRQPLNYIIVNLSVADFCLSLVGGTISFLTNARGYFFLGRWACVLEG
FAVTFFGIVALWSLAILAFERFFVICRPLKNVRLGVKHAALGLLFVWTFSFVCTIPPVLG
WNSYTVSKIGTTCEPNWYSRDYKDHTYIITFFVTCFILPLGVITVSYGKLMQKLRKVSNA
HGKLGNARKPDQAVARMVIVMIIAYMVGWTPYAAFSILVTVDPTININPCLAAAPAFFAK
TAAVYNPIIYVFMNKQFRKCLIQMFKGNGNSIDSSHLNPTSNKGAITQTECNLGEMSSIA
THVPMNMCNLEKTDEDEEQNQHENRSSTELPLSESRVCPL
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgccgtcagcatggacgccttcctgtcttccgttaacgggtcccacaccgac
gctccagaagtggcgacgcctcgggatcccttcgccggtcctctcgactcggtcgcgccc
tggaactacacgttaattgcgtgcttgatgtttgcagtgacttccctctctctggcagaa
aactccacagttatgatagtaacatacaaatttaaacagctgagacagcccctgaattac
attattgtcaacttatctgtggctgacttctgcttgtcgctggtcggaggcacaatcagt
ttcctgaccaacgcgcggggttacttcttcctgggcaggtgggcgtgcgtcctggaggga
ttcgccgtgacttttttcgggattgttgctctctggtctttggcaatcctggcttttgag
cgtttctttgtgatctgtcgcccattgaaaaatgtccgtttgggagtcaaacatgcagca
ctgggtcttctgtttgtctggactttctccttcgtctgtactattcctccagtgcttggc
tggaacagctacacagtcagcaagattggcactacttgtgaacccaactggtactcaaga
gactacaaggaccatacttacataatcaccttctttgtcacctgctttatccttccactt
ggagtaatcactgtctcctatggcaaactcatgcagaaactcagaaaggtatccaatgct
catgggaaactaggtaatgctcggaaaccggaccaggcagtggcaaggatggtcattgta
atgattattgcctatatggttggctggacaccttatgcagcattctccatcctcgttaca
gttgatccaaccatcaatattaacccttgccttgcagcagcaccagccttcttcgctaaa
actgcagctgtgtacaatccgatcatttacgtgttcatgaacaagcagttcaggaaatgc
ctgattcagatgtttaaaggcaatggcaacagcattgactcctcccatttgaacccaacc
tcaaacaaaggggctatcacacaaacagaatgtaacttgggagagatgtcctccattgct
acccatgtgcccatgaacatgtgcaacctggagaagactgatgaggatgaagagcagaac
cagcatgaaaatagaagctccacggaacttcctctatcagaaagcagagtctgtcctcta
taa
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