Ictalurus punctatus (channel catfish): 108273645
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Entry
108273645 CDS
T04658
Name
(RefSeq) integrin alpha-M
KO
K06461
integrin alpha M
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04145
Phagosome
ipu04514
Cell adhesion molecules
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108273645
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108273645
09142 Cell motility
04810 Regulation of actin cytoskeleton
108273645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108273645
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108273645
04515 Cell adhesion molecules [BR:
ipu04515
]
108273645
04090 CD molecules [BR:
ipu04090
]
108273645
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108273645
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
108273645
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108273645
Cell adhesion molecules [BR:
ipu04515
]
Integrins
Integrin alpha subunits
108273645
CD molecules [BR:
ipu04090
]
Proteins
108273645
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
108273645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
VWA_2
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP_3
Motif
Other DBs
NCBI-GeneID:
108273645
NCBI-ProteinID:
XP_053540891
UniProt:
A0A9F7REV7
LinkDB
All DBs
Position
13:2986594..3037870
Genome browser
AA seq
1137 aa
AA seq
DB search
MTAFKMDWNFPVYFFLISVSWSVMAFNIDPNPWKDFTQNQSTAFGYKVIQKNSLSLIVSD
PLTQSRNERGKVYSCDVAQEKCSQIPMNVPSEAVNMSLGLSMTKDPQSSKLVVCGPTIPK
DCKHFTAYNGMCFTLDNNNNQSGPIPSTLRDCQQTDIAFLLDGSGSISQQDFTTMKNFVI
NMVNGLKDRDFQFAVAQYSSNFQIHIKFNSFSSTDQIRGINQFGGGTYTATAIKRVVAEL
FTSEAGARENANRVLVVITDGESHDRSELGNAAQDAEQKKITRYAIGVGSAFNNPSAENE
LKTIASDPDDKYVFKVNDFSVLTEIRDTLKENIIAIEGTQTSGESTRMEFAQDGFSADFV
SNGIIMSAVGAFQWKGGYQKYNHSRAPVDSFQKGNSNDSYLGYSMTVAKTNLQQYIIQGA
PRDTHMGKVIITGNKVFQTLDPPEPQIGAYYGAELCLVDLDLNNFTDLLLVSAPLHNEGD
QEGKVVVYTFTTSMFQTLQVNHIQTLKGIPGQRGRFGLMLASPADLNGDGLADIVVGAPL
EENGQGSIYIFNGRTEDIVPTFSQRIRGSSVRPGLQFFGVSLSQSALDHSGDQLPDLAVG
SKGAVILLRSRPIVRLWNTVTYNPSKIPTNDTDCTSPLNNTVKLCFTMKGLNTGTKDLTA
NINYTLKLDAKRQSYRAYFSPKNRVLIGTISVSLQEKCNQHEFLIEACPNDALNPISNEL
VYTFEGLPSQKLNNLWPMLPPNTKNTSDHNLDFEINCGTDNICIDNLKVDFNFSGYSVIQ
VGIMQEMNVTVFIENRGENSYNSRVILKYPFGLSFRRFTIKQGRLECVSVDSDEKAALGE
TTCFISKPIFKNNGLAIFDVTYNINKDSNFDRMLTFTASVSSDNDKHAPDNELFKNKTID
VKYAIYIALIRHENSTIHINFTAGKNDLEKPVHQIFKVENDLRDLSVDLFIRVPIKLGVK
DIWTNNSLQIQGCNADNDEQPTIQDFVAALHKQPEVNCSVAVCRVFKCPANLIRKQTKFY
TISGNVSSGCIEQTGLRSAVFELVSTATLDYNKTTYIYFSDSVNTAPTGKINTQVEVYEE
KFPLKETIGGVVGGLVLLAFITAGLYKAGFFKSNYKKKLEEARARAKGTGDGTGESK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatttaaaatggactggaattttccagtgtatttcttcctgatttctgtatct
tggtcagtgatggctttcaacattgatccaaatccatggaaagatttcacccaaaatcaa
agcacagccttcggctacaaagtgatacagaaaaacagcttgagtttgattgtgagtgat
cccttaacccaaagtcggaatgaaagagggaaagtgtacagctgtgacgttgcacaagaa
aaatgctcacaaataccaatgaatgtaccttctgaggctgtcaacatgtcccttggcctt
tcaatgactaaagatccccagtcttcaaagctagtggtctgtggcccaacaattcccaag
gactgtaagcactttactgcctacaatggcatgtgttttacattggataacaacaataat
caatcaggacctataccaagtactttgagagattgccaacaaacagacattgctttcttg
ttggatggctctggaagtataagccaacaggatttcactacaatgaagaattttgttata
aacatggttaacggcttaaaagacagggattttcagtttgcagtggcacaatattcttca
aactttcaaatacacataaaattcaacagcttttcaagcactgatcaaataagagggatc
aatcagtttgggggaggtacctacactgctactgcgatcaaaagagttgtagctgaatta
tttaccagtgaggcaggggccagagaaaatgctaacagagtgttggtggtcatcactgat
ggtgaatcacatgaccgcagtgagctgggaaatgctgctcaggatgcagagcagaagaaa
attactcgctatgctataggggtcggtagtgccttcaacaacccatcagcagagaatgag
ttgaaaactattgcatcggatccagatgataaatatgtatttaaagtgaatgacttttct
gtattgacggaaattcgagacacactgaaagagaatatcattgcaattgagggaacccag
acttcaggagaatccaccaggatggaatttgcacaggatggcttcagtgcagactttgtt
tcaaatggtataataatgagtgcagttggagcgtttcagtggaaaggtggttatcagaag
tacaatcacagcagagcacctgtagactcctttcagaagggcaacagtaatgacagctat
ttaggttattccatgacagtagcaaaaacaaacttgcagcagtacatcattcagggagct
ccaagagatacgcacatggggaaagtgatcataactggcaataaagtctttcagacactg
gatcctcctgagcctcaaattggtgcctattatggtgctgagttatgcttggtggacttg
gatttgaacaacttcacagaccttctacttgtttctgctccactgcataatgagggagat
caggaaggaaaagttgtcgtctacacctttacaacatccatgttccagactttacaggta
aatcacatacagacactgaaaggaattccaggacaaagggggaggtttggcctgatgttg
gccagccctgcagatctaaatggggacggtctggcggatatagtggtaggagcacctcta
gaggagaatggccagggcagcatctacatctttaatggaagaacagaagacattgtcccc
accttctcacagagaatcagaggctcgtctgtgcgccctgggctgcaattttttggtgtt
tctctgagtcaatcagctctggatcatagtggagaccagctgccagatcttgctgtcggt
tccaaaggagcagtcatacttttaagatcgagacccatcgtgcgcttgtggaacacagta
acttacaacccgtccaaaatccccaccaatgacaccgattgcacgagtcctttgaataac
acagtaaaattgtgtttcactatgaaaggattaaatactggcacaaaagacttgactgca
aatataaactatacattaaaacttgatgccaaacgacaaagctaccgggcctacttttca
ccgaagaaccgtgttctaattggcacgatatctgtgtcgctgcaggagaagtgcaatcag
catgaatttttgatagaggcctgccccaatgatgcactcaacccaatatctaatgagtta
gtgtatacatttgagggtctccctagtcaaaaacttaacaatttatggccgatgctgcct
cctaacacaaagaacacctcagatcataatctggattttgaaataaactgtggaaccgat
aacatctgcattgataatctcaaagtggattttaacttttctggatactcagtcatacaa
gttgggataatgcaggaaatgaatgtgactgtcttcatagagaacagaggggaaaattcc
tacaacagtcgagtaattctgaaatacccgtttggactttccttcaggagattcactatt
aaacagggcagactggagtgtgtatctgtggatagtgatgaaaaagcagcactgggggag
acgacttgtttcatcagtaaacccatcttcaagaacaatggcttggctatcttcgatgtt
acatataacataaacaaagacagtaactttgacaggatgttgacattcactgcatctgtt
tccagtgacaatgacaaacatgcacctgacaatgaactattcaaaaacaaaaccattgat
gttaaatatgccatctacattgcgttgatcaggcacgagaattccactatccacattaat
tttaccgcagggaaaaatgaccttgagaaaccagtccaccaaatattcaaggtggagaat
gacctcagagatttgagtgtcgaccttttcatcagagtacccataaaattaggagttaag
gacatctggactaataacagcttgcagattcaaggctgcaatgcagacaatgatgagcaa
cccacaatccaagattttgtggcagctctgcataaacagcctgaggtgaattgctccgta
gctgtgtgcagagtgtttaaatgtcctgcaaatctcattagaaagcagacaaaattctac
accatctctggtaatgtcagctctggatgcattgaacagaccggattgcgatcagcagtg
ttcgagctggtcagtacagcaacactggactataacaaaacgacatatatctacttctct
gattctgtaaacactgcacccactggcaagattaatacccaggtggaggtgtatgaggag
aaattcccacttaaggagacaattggaggtgttgtaggagggcttgtgcttctggctttt
atcactgcaggcctctacaaggctgggttctttaaaagcaactataagaagaagttggag
gaagccagagcaagggctaaaggaaccggagatggcacaggggaatctaagtga
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integrated database retrieval system
