Ictalurus punctatus (channel catfish): 108273654
Help
Entry
108273654 CDS
T04658
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03430
Mismatch repair
ipu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108273654
03460 Fanconi anemia pathway
108273654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108273654
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
108273654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
108273654
NCBI-ProteinID:
XP_017338511
Ensembl:
ENSIPUG00000003050
UniProt:
A0A2D0S7V3
LinkDB
All DBs
Position
13:11983872..11997786
Genome browser
AA seq
857 aa
AA seq
DB search
MTESCSEPARAIRAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGATQVDIKLKENGT
ELVEVSDNGRGVQEENFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHESSHVGTRLVFDHNGRLVQRAPHPRQQGTTVSLQQLFSTLPVRHKEFQRNIKKEFSK
MVHVLQSYCIISTGVRITCINQLGQGKRNTVVCTSGSHSLRDNIGALFGPKQLQSLLPFQ
QISPNELVKEDYGLTGEELPKDLFTISGYVSQADHGVGRSATDRQFFFINKRPCDPSKVS
KLVNEVYHMFNRHQYPFVALNISVASECVDVNVTPDKRQVFLQEEKVLLAILKSSLIAMY
ETGVNKISPNLTPLITGISSRNSDSAVSSEGPRKASLSGLTSEVDSETLTQTPKTSFNLA
GLKAAFSKQKFTEIGTKTSNNKAVHDVPAPKKMQSFFHCSGKTNYSRSPDTASEKAASSL
KAFKSDLTKHEHKLDMEADSGMSEQGSITETPETVCGSSSEFDSPDLVLEEPGIKTEPYS
ESVDEVHDVLETSEQETVSVIDPERISSPKAKKYRWDHRLSEQPQLPSSSASGTSCGLFD
KPVRVQKKTVPLQFSMTELIKRMEKLKTQQRSQNDQEPKYRLFRAKINPGENQSAEDELK
KEISKDMFKEMEVIGQFNLGFIVTKLKSDLFIIDQHATDEKYNFEMLQQHTVLNGQRLII
PQNLHLPATSETILIENLEIFKKNGFDFLIDENAPVMERVKLISVPTSKNWTFGPGDIEE
LIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMKKLVVHMGEIEQPWNCPH
GRPTMRHLLNLDVISQD
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgacagagtcttgctctgagccagccagagccatcagggccattgataaacactcagtg
catcagatctgctctggacaggtggtgttgactttggcaacagctgtgaaagagctggta
gagaacagcatcgacgcgggcgctacacaagttgacatcaagctcaaagagaacgggaca
gagctggtggaagtctctgataacggacgaggtgtgcaggaggagaactttgaaggccta
actttaaagcaccacacatcgaaactgagagatttctccgacttaattcatgttgagaca
tttggcttccgtggtgaagccctgagctcgctgtgtgctctcagtgacctcagcgtggtg
acctgtcatgaaagtagccatgtgggcactcggctcgtctttgaccacaatggccgtctt
gtccagcgagccccccatccccgacagcaggggaccaccgtcagccttcagcagctcttc
tccaccctaccagttcgtcacaaagagtttcagcgcaacatcaaaaaggaattttctaag
atggtccatgtcctgcagtcatactgcatcatctctactggtgtgcgcatcacatgcatt
aatcagcttggccaaggcaagcgtaacacagtagtgtgcaccagcgggagccacagcttg
agggacaacattggagcgctgtttgggccgaaacagctccagagtctacttccttttcag
caaatatctcccaatgagcttgttaaagaggattatggcttaactggcgaagaacttcct
aaagaccttttcacgatctctggttacgtatcacaagctgatcacggtgtgggacgaagt
gcaactgaccggcagtttttctttattaacaaaaggccctgtgatccatccaaggtttcc
aagcttgtaaatgaagtctaccacatgttcaaccgtcatcagtacccatttgttgctcta
aacatttctgttgcttcagaatgcgtcgacgtcaatgtcacacctgataagcgtcaggta
tttctgcaggaggagaaggtattgcttgccatcctgaagagctctctcatcgccatgtat
gagactggagtcaataaaatcagtcccaatctcacaccactaatcacaggcatttcttcc
agaaatagtgattctgctgttagttcagaaggtcctcgaaaagcttcgctgtccggattg
acttcagaagttgattcagagactttgacacagaccccaaagacatcttttaacttagct
ggactaaaggcagcattttcaaaacagaagtttactgaaattgggacgaagacctctaac
aataaagctgtgcatgatgttccagctccaaaaaagatgcagtcttttttccattgctca
ggaaagactaactacagcagatcaccagatactgcttcagaaaaagcagcttcatcactg
aaagcttttaaatcagacttaaccaagcatgagcacaagttggacatggaggcagattca
ggtatgtctgagcaaggctccatcacagaaaccccagagactgtgtgtggaagcagttct
gagtttgactctccagacttggttttagaggaacctggcattaaaaccgagccttacagt
gagtctgtagacgaggtgcatgatgttttagaaacgtcagagcaagagacggtgtctgtt
attgaccctgaaagaatttctagtcccaaggcaaaaaaatataggtgggatcataggtta
tcagaacagccccaactgccatcctcaagtgcgagcggtacttcctgtggactgttcgac
aaaccagtcagagtgcagaagaaaaccgtgcctttgcagttttcaatgactgagctgatt
aaaaggatggagaaactaaagacccagcaaagaagccagaatgatcaggagccaaaatat
agactcttcagggcaaagattaaccctggtgaaaaccagagtgcagaggatgagctgaag
aaagagataagcaaggacatgtttaaggagatggaggtcattggtcagttcaacctgggt
tttatcgttaccaagttaaagtcagatctttttattatcgaccagcacgccacggacgaa
aaatacaactttgagatgctacaacagcatactgtcctaaatggacagagacttataatt
ccacagaacctccaccttcctgctacaagtgaaacgatactgattgaaaatctcgaaatc
ttcaagaaaaatggttttgacttcctcattgatgagaatgcaccagtcatggagagagtg
aagctgatatctgtacctacaagtaagaactggacttttggcccaggtgacattgaggag
ctcatcttcatgcttagtgacagtcctggagtcatgtgcaggccttctcgagtcaggcag
atgtttgcatcgagagcttgccgcaaatcagtaatgattgggactgcgctgaataccagt
gagatgaagaagctcgtggtccacatgggggaaatcgagcagccttggaactgtcctcac
ggcaggccgaccatgaggcacctgctcaaccttgatgtcatttctcaggactga
DBGET
integrated database retrieval system
