Ictalurus punctatus (channel catfish): 108273657
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Entry
108273657 CDS
T04658
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108273657
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108273657
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108273657
Peptidases and inhibitors [BR:
ipu01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108273657
Ubiquitin system [BR:
ipu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108273657
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
108273657
NCBI-ProteinID:
XP_053541357
UniProt:
A0A2D0S707
LinkDB
All DBs
Position
13:complement(11953545..11968598)
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AA seq
1136 aa
AA seq
DB search
MTIVDKASEKSDFGSAQCKHSGSLTPVSSGGVDNGSSSWSVDSSTAELSRAMATCVEVAV
YGGTTTLPAERTNEQVAMSFGDGITLPQKVLFPSERLSLKWTQVHRIGAGLQNLGNTCFL
NSALQCLSYTAPLANYMLSREHSKTCHEPGFCMLCTMQNHITQVFANSGNAIKPLGVLHE
LKRIAKHFRCGNQEDAHEFLRYTVDAMQKACLPSNKLDRQTQATTLIHQIFGGYLRSRVK
CGNCKAVSDTFDPYLDIALDIKNAPTITKALEQFVKAEQLDWENAYKCSTCKEMVQASKR
LSIHRNSNVLTISLKRFANFNGGKISKDVRYSEYLDLRPYMSQSHGESQIYGLYAVLVHS
GFSCYAGHYYSYVKASNGQWYQMNDSSVTPTDLRSVLNQQAYLLFYIKHGSTDLKSGDST
QMGFTPGHSSPRPVVTPKLNGHSYTSSSIIGPQLPPHMLKNNSYVNGTGSSKEHYSGSKP
SSSDVSGVNKAASNLSHSSISSSVSQQPVQPTGIPEPQKRPKMSFVVGYGKVVRCNRTPS
TSNSSASNSHPQSSSSTSKFQRSKQVNGTSSYRSATFLVPYDEESSEESDQESRVMDNGT
AKSHGVAKAASGDGGMHSPHYHSSSSLLPERNGSNSLSESHTGENGSGHGPLNGYHKVNG
FKHPDKASDSPTSESSVSDTNSLDSQSASSSKSEGLLSSTPSTERAKPLTDPLTKPVSHP
VPTPGADTQTLAKPAEVTPSTQAALTEASSQVKATAESTLSNHSLTQQASDEFASSNKPK
VEMESVNGANGKDDVKTCQSDKPSSWEGKSHQEHDRDLKQPHVSPAAKDRDKDKESYRNY
RELQDRSRERYGHGHRPEREYYPRKDRSRSHHRDKEGTRCRDRYAYHRRDHHYKRGRSRD
WERDRRYQSLHCSSNRYYRELGWRRAREDSRDRWHYNGEQSSNRAKPSSPRSTSPSPRHR
TRKLILSGEDSTSEERRAKKYKKSKKKNKDKHRSLERDVSDKTQDSSSSLHKKKKKKKRR
REAEDGARRERQSTLSSDKRDWNGEERRSHKCRRSSDQDGSPHRAKLSCTEDHRQLNGHS
AGDGVNRYNGYVQGFCHKEMDAPVKYGDLNHTSSNNNGKIFLCGGDNGETGPVPCR
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgactatagttgacaaagcttcagagaaatctgactttgggtcagcgcagtgcaaacac
tccggctccctgactcctgtctcctctggaggcgtggacaacggcagctccagctggagt
gtcgactcttctacagccgagctttccagggccatggctacctgtgttgaagttgctgtg
tacggaggaactacaacacttcctgctgagaggacaaatgagcaagtggccatgagtttt
ggcgatggcatcactctgccccaaaaggtcctgtttccatcagagcgtctcagcttgaaa
tggacccaagtccatcgtattggagcaggcctccagaacctgggcaacacatgtttcctg
aattcagctcttcagtgtctttcatacactgcacctcttgccaactacatgttgtccaga
gagcattccaaaacatgtcatgagcctggattttgcatgctgtgtaccatgcagaatcac
atcacccaggtgtttgctaattcggggaatgccattaagccccttggagtgttgcatgaa
ctaaaacggattgcaaagcatttccggtgtgggaatcaagaggatgcccacgagttcttg
cggtacacagtggatgctatgcaaaaggcctgtctgccttccaataaacttgacaggcaa
acacaggccactactctgatccatcagatatttggaggatatttgaggtccagagtaaag
tgtgggaactgcaaagcagtatcagacacctttgatccttatttggatattgcattggat
atcaagaatgccccaactattaccaaggctcttgagcagtttgttaaggctgaacagttg
gattgggagaacgcctacaagtgcagcacttgtaaggaaatggtgcaagcctcaaaaaga
ttaagcattcaccgcaactccaatgtgctcaccatctctctgaaacgctttgccaacttc
aatggaggcaaaatctccaaggatgtgagatactcggagtatcttgacttgcggccctac
atgtctcagtctcacggagagtcgcagatttacgggctgtatgctgttctggtgcactca
ggcttcagctgctatgctggacactactactcctacgtaaaagcaagtaatggtcagtgg
tatcagatgaatgattcatcagtgactcccactgatttacgatctgtgctgaaccaacaa
gcatacctgctgttctacatcaagcacgggtctacagatctgaaaagtggagattcgacc
cagatgggttttactccaggtcactcatccccacgaccagttgtaacacccaagctaaac
gggcattcttatacttcctcatcaataattggaccacaactccctcctcacatgttaaag
aataactcgtatgtcaacggaactggttcctcaaaagagcattacagtggctcaaagccc
agcagcagtgacgttagcggagtgaacaaagccgcctccaatttgtcacactcttccata
tcgtcctccgtttctcaacaacccgtccagcccacaggcatcccagagccacagaagagg
cccaagatgagctttgtcgtcggctacggaaaggtggtgcggtgcaaccggactccatca
acctccaacagctcagccagcaattcacacccacagtcctcatcctctacctcaaaattc
cagcgctccaagcaggtcaacggcacatcctcgtatcgcagtgctactttcctggttcct
tatgacgaggaatcatctgaggagtctgaccaggagagtagagtcatggacaatggtaca
gctaagtctcatggcgttgccaaggcagccagtggggacggaggcatgcacagccctcac
tatcatagttcaagctcacttttgcccgaaagaaacggatctaacagcttgtcagagtct
cacaccggtgaaaatgggtcaggacatggccccctgaatggctatcacaaagtcaacggt
ttcaaacatcctgacaaagcgtcagacagtccaacttctgaatcgtccgtaagcgacact
aacagtttggattctcagagtgcgtcaagctccaagtcagagggcctcctctcctcaaca
ccctccacggaaagggctaaaccactcactgatccgctcactaagcctgtctcgcaccca
gtacccacacccggcgcagacacccagacactggctaagccagcagaagtgacgcctagc
acgcaggcagccttaacagaggcatcaagtcaagtgaaggccacagcagagtccactctg
agcaatcacagtctcacccagcaggcgagtgatgagtttgcatcgtcaaacaaacccaag
gtggagatggagtctgtaaacggcgcgaatggcaaagacgacgtgaaaacatgtcagtca
gacaaacccagctcttgggaaggaaaaagccaccaagagcacgatagagatttaaagcag
ccacatgtttctcctgccgcaaaggacagagataaagacaaggagagttatcgaaactac
agagagctccaggacaggagcagagaacgttatggacatggccatcggccagagagagag
tattatccacgtaaggatcgctcccgcagtcaccacagagataaagagggaactcggtgc
cgagacagatatgcgtaccaccgccgagaccaccattacaaaagaggccggtcgcgggat
tgggagcgggacagaagataccagtccttgcactgctcttcaaaccgctattatagagag
ctgggctggcgccgtgcacgcgaagacagtcgtgatcggtggcactacaatggagagcag
agcagcaatagagcaaagccctcctctccacgttctaccagcccctcgccccggcacagg
accagaaaactcatcttgtcaggtgaagacagcacatctgaggagcgcagggccaagaaa
tacaaaaaatctaagaagaaaaataaagataagcacaggagtttggaaagggacgtgtcc
gacaagacccaggacagcagctccagcctacacaaaaagaagaaaaagaagaagaggagg
cgcgaggcggaggacggagctcgcagggagagacagtccaccctcagctcagacaagcgt
gactggaatggcgaagagaggagaagccataagtgccggcgcagctctgaccaagatggt
tctcctcaccgtgccaagctgtcatgcaccgaggaccatcggcagctcaacggtcactcg
gcaggtgatggtgtaaaccgttacaacggatatgtccaaggattctgtcataaagaaatg
gatgcaccggttaaatatggagacctgaaccatacttcctctaacaacaatgggaagata
ttcttatgtggaggagacaatggagagacaggtcctgtgccatgcagataa
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