Ictalurus punctatus (channel catfish): 108273672
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Entry
108273672 CDS
T04658
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108273672 (rnf40)
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108273672 (rnf40)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
108273672 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
zf-C3HC4_3
BRE1
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_UBOX
SpoIIE
zf-rbx1
SAM_5
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
108273672
NCBI-ProteinID:
XP_017338553
Ensembl:
ENSIPUG00000018115
UniProt:
A0A2D0S727
LinkDB
All DBs
Position
13:14404352..14419986
Genome browser
AA seq
1005 aa
AA seq
DB search
MSGTGGKRASGGDSPPGPPEKKMKKEEKTTTTLIEPIRIGGVSSTEEMDMKVIQFKNKKL
LERLEQRQAIEDELREKIEKLEKRQATDDATLLIVNRYWTQLEENVQELLQRVEPKTGPV
PAQAPVSPPASASAPDPATAPLPATDIPAPLPTPLEGEDGFPQPPPPADEEEQQQQQSEQ
LQQDKELQQEQSDAAQKPPEEPVVDGIAAPPPPPPLRESAKAFLSTLDNSSEEELSLQLQ
DRMQFSKDAVACIVCIFDRLHSTIEDLCTRTQAAVCEDDSQREVIATNRSLLEENNKLQD
LASSLQGRHHKMSLEYNELVDKVTSSETKVSEMETAVEDLQWDIEKLRKREQKLNKHLAE
ALEQLNSGYHASGRSGGLPGGQITLNIQKFESLNAELEQNQELANSRMAELEKLQQELQE
AVRESEKLKMDLRNIPEEVVKETPEYKCLQSQFSLLYNESLGVKTQLDEARALLLTAKNA
HLRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINRE
MRHLISSLQNHNHQLKGDVQRYKRKLRETQAEINKMKCQSGDNGSMLTLEESVNDGGLDV
KKEEEDDQDEEEERRRELERQRAREREREAERERERERERERQRSEELKRKDSDTLKMLR
TELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVDELRQRVRELEERERK
ESKKLADEDALRKLRVAEETIEHLQKKLTATKQEEEALLSEMDVTGQAFEDMQEQNSRLM
QQLREKDDANFKLMSERIKSNQIYKLLREEKEELADQVLTFKTQVDAQLLVVQKLEEKEG
ILQSSLATLEKELSLRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLREIQASVLENRS
ARERESGNLKRAQEDLSRLRRKLEKQKKVEMYTDADEILQEEINQYKAKLRCPCCNTRDK
ETVLTKCFHVFCYECLKTRYDTRQRKCPKCNAAFGANDFHRIYIT
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcaccggaggaaagcgagcctctggaggggacagtcctccggggccacctgaa
aagaaaatgaagaaggaggagaaaaccacgaccactcttatagaacctattcgcatcggc
ggcgtttcttctacagaggaaatggacatgaaggttatccagtttaagaacaagaagctc
cttgaacgcctcgagcagaggcaggctatcgaagatgagctaagagagaaaatcgagaag
ctggaaaaaagacaggcgactgatgatgccacgcttcttatcgttaaccgctattggact
cagctggaagaaaatgtgcaagagttactgcagagagttgaacctaagactggtccagtg
cctgcacaggcccctgttagtcctccagcatctgcctctgcccctgatcctgcaactgcc
cccttacctgccactgatattccagctcctctgccaactccactggaaggagaagatggc
tttcctcagcctcctcctccagcagatgaagaggaacagcagcagcagcagtctgaacaa
ctccagcaggataaggagctgcaacaggaacaatctgatgcagcgcagaagccgcccgaa
gagccagtagtggatggaattgctgctcctcctccaccacccccgttgagagaaagtgcg
aaggctttcctctccactctggataacagcagtgaagaggagctcagcctgcagctacag
gacaggatgcagttcagtaaagatgcagtggcctgcatagtctgcatctttgaccgcctg
cacagcaccattgaagacctgtgtacccgtactcaagcagcagtatgtgaagatgacagt
caacgagaggttattgccacaaatcggagtctactagaggagaataataaactacaagat
cttgcttcctcgctgcaaggacgacaccacaaaatgtcactggagtataatgaattagtt
gataaagtgaccagctctgagacaaaagtgtctgagatggagacagctgtggaggacctg
cagtgggacattgagaagcttcgcaagagagagcagaaactcaataaacacttagcagag
gcccttgaacagctgaattcaggctaccatgcttctggtaggtctggtggccttcctggt
ggtcagattactctcaacatacagaagtttgagtcactaaatgcagagctggagcagaac
caggagctggccaatagtcgcatggcagagctagagaaacttcagcaagagttacaggag
gcagtgagggaaagtgagaaactcaagatggaccttcggaacattccagaggaggtggtg
aaggaaacaccggagtacaagtgtctccagtctcagttctctctgttgtataatgagtct
ctgggagtgaagacgcagctggacgaggcccgggctctgctgcttactgccaaaaatgct
cacctgcgccagatagagcacatggagagtgatgagttgtcccttcagaagaagttgcga
actgaggtcatccagttagaggatacattagctcaggtgcgcaaggaatatgagatgcta
cggattgagtttgaacagaaccttgcagccaatgagcaagcaggcccaataaacagagaa
atgaggcacctaatcagcagccttcagaatcataaccaccagctcaagggggatgtgcag
agatacaagaggaagttacgggagacgcaggcagagatcaacaagatgaagtgccagagt
ggagacaatggcagtatgctaactttggaggagagtgtgaatgacggaggactggatgtg
aaaaaggaagaagaggatgaccaagacgaggaggaagaaaggaggagagagctggagagg
caacgagcccgagaacgtgagagagaggcagaaagggagagagagcgagaacgggaacgg
gaaaggcagcgcagtgaggagctgaagagaaaagactcggacacactgaagatgctccga
acagagctcaagaaagcacaggaatctcagaaggagatgaagctgctgctagatatgtat
aagtctgctccaaaagagcagagagacaaagtgcagctcatggcagctgagcggaaatca
aaagcagaggtggatgagttgaggcagcgggtacgagagttggaggagagagagaggaag
gaaagtaagaaactggctgatgaagatgctctgaggaagcttcgagtggcagaggagacc
atcgaacatctgcaaaagaagctcactgccactaaacaggaagaggaagccttgcttagt
gagatggacgtgacgggtcaggcttttgaggacatgcaggaacaaaacagtcgtttaatg
cagcagctgcgtgagaaagatgatgccaacttcaaactgatgagtgagaggatcaaatcc
aaccagatctacaaactgctaagagaggagaaagaagaactggctgaccaggtgctcacc
ttcaaaacccaggttgatgcgcagttgctggttgttcaaaagctggaggaaaaggaaggc
atcctacaaagttcactggctactctggagaaagagttatcactacgcacacaagctcta
gaactcaacaagcgtaaagcagtggaagcagctcagctggctgaagacttaaaggtgcag
ctggagcacactcaggccaagctgagggagatccaggcctcggtgctggaaaaccgcagt
gcacgtgaaagagagagtggcaacctcaagcgtgcacaggaggacttgtcaagactccgc
cgaaagctggagaaacagaagaaggtggagatgtatactgatgcagatgagatcctgcaa
gaagaaataaatcagtataaggctaagctgcgctgcccctgttgtaatacccgggataag
gagactgtgcttacaaagtgtttccatgtcttctgttacgagtgcctgaagacccgctat
gacactcggcagaggaaatgtcccaagtgcaatgctgcttttggagccaatgacttccat
cgcatttacatcacttaa
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integrated database retrieval system
