Ictalurus punctatus (channel catfish): 108273729
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Entry
108273729 CDS
T04658
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03020
RNA polymerase
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108273729
09124 Replication and repair
03420 Nucleotide excision repair
108273729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108273729
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108273729
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108273729
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108273729
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108273729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108273729
NCBI-ProteinID:
XP_017338671
Ensembl:
ENSIPUG00000002613
UniProt:
W5UD45
LinkDB
All DBs
Position
13:complement(27527384..27541261)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILGKSKGQPRKRLMHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKY
ARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPFKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFEYTNERALRRTLQEDVLKEVMTNAHVQSALEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLLNIHLRSTLCSRRMTEEFRLSSEAFEWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKKTII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacagaagggggcatcaag
taccccgagaccacagagggtggacgtcccaaactgggcggcctcatggacccccggcag
ggggtcatcgagaggtcggggagatgccagacgtgtgcaggtaacatgaccgaatgtccg
ggtcacttcggtcacatcgagctggccaagcccgtctttcacgtcggcttcatcacgaag
atcatgaaagtcctccgctgtgtgtgtttcttctgctccaagctgctggtcgatgcgaac
aacccaaaaatcaaagacattctgggcaagtcgaaaggacagccgcgaaagcgcctgatg
cacgtctacgacctgtgtaaaggtaaaaacatctgcgagggcggcgaggagatggacaac
aagttcggagtggagcagcaggagaacgacgaggacctgactaaagaaaagggtcacggc
gggtgtgggcggtaccagcctcggatccggcgcacaggcctggagctgtacgccgagtgg
aagcacgtgaacgaggactctcaggagaagaagattctcctcagccccgaacgcgtgcac
gagatcttcaaacgcatctctgacgaggaggatctcatcctggggatggatcccaagtac
gcacggcccgagtggatgatcgtcaccgtgctgccggttccacctctctccgtcagacct
gctgtggtcatgcagggctcagccaggaaccaggacgatttgacgcacaagttagccgac
atcgtgaaaatcaataaccagctgcgacggaacgagcagagcggagctgcggcgcacgtc
atagcagaagacgtcaagctcctgcagttccacgtggccaccatggtggacaacgagctg
cccggtctgcctcgagcgatgcaaaaatccggccggccgctcaaatccatcaaacagagg
ctgaaggggaaagaaggccgagtgcgaggaaacctgatggggaagcgcgtcgacttctct
gcccggacagtcatcacgcccgaccccaacttacagatagaccaagtaggcgtgccccgc
tccatcgccgccaacatgaccttccccgagatcgtcacgccgtttaacatcgacaggctc
caggagctggtgaggagaggaaacagccagtatcccggagccaaatacatcatccgcgat
aacggggaccggatcgacctccgtttccacccaaaaccgagtgaccttcaccttcagatc
ggctacaaggtggagcggcacatgtgcgacggcgacatcatcatctttaacaggcagccc
accctgcacaaaatgtctatgatgggtcacagggttcgaatcctgccttggtctaccttt
cgactcaacctcagcgtaacgactccttacaacgccgacttcgacggggacgagatgaac
ctccacctgccccagtcgctcgagacccgtgccgagattcaggagctggccatggtgcca
cgtatgatcgtcacaccccagtccaacagacctgtcatgggtatcgtgcaggacacgctc
accgccgtgcgcaagttcaccaagcgagacgtcttcttagagaggggtgaagtgatgaac
ctgctgatgttcctgtcgtcctgggacggcaaagtgccgcagcctgctatcttaaagcca
cgcccactgtggaccggcaagcagatcttcagcttgatcattccgggtcacatcaacgtg
atccgtacgcacagcacgcatccggacgacgaggacagcgggccgtttaagcacatctct
cccggagacactaaggtgatcgtggagaacggagagctgatcatggggatcttgtgtaag
aagtccctcggtacgtctgccggttctctcgtccacatctcctacctagaaatgggtcat
gacatcacccgcctcttctactccaacattcagactgtcgtcaacaactggctgctcatc
gagggtcactccattggtatcggtgactccatcgccgacgcgaagacgtatctcgacatt
cagaacaccatcaagaaggccaagcaagatgtgatagaggtcatcgagaaagctcacaac
aacgaactggagcccacaccgggtaacaccctgagacagacctttgagaatcaggtcaac
cgtatcctgaacgacgctcgagacaagaccggatcttctgctcagaagtcgctgtccgag
tacaacaacttcaaatccatggtggtggccggatccaagggctccaaaattaacatctca
caggttattgctgtggtgggtcagcagaacgttgaaggtaaacgaatccctttcgggttc
aagcaccgcactcttcctcacttcatcaaggacgactacggtcccgaaagcagggggttc
gtggagaactcgtacctcgccggtctgacgcccacagagttcttcttccacgccatggga
ggtagagagggtctgatcgatacggccgtgaaaacagccgagacgggttatatccagcgt
cgtctgatcaagtctatggagtctgttatggtgaaatacgacgccacggtgaggaactcc
attaaccaggtggtacagctgagatacggagaggacggcctggctggagaggctgtcgag
ttccaaaacatggccacgcttaaaccgtcccacaaagcttttgagaagaagttcaagttt
gaatacactaacgagcgagctctccggcgcacgctgcaggaggacgtgctgaaggaggtg
atgaccaacgcgcatgtgcagagcgctctggagagggagtttgagaaaatgaaggaggac
cgagagatcctgagagccattttccccactggggacagcaaggtggtgctgccgtgcaat
ctggcccgaatgatctggaacgctcaaaagattttccgcatcaaccctcggaccccgaca
gatctcaaccctttaagagtggtggagggtgtgcaagagctgagtaagaagctggtgatc
gtgaacggcgacgatccgttaagcaagcaggcccaacagaacgccacgctgcttctcaac
atccatctgcgctccacgctctgctccagacgcatgaccgaagagtttcgtctcagctcc
gaggccttcgagtggctcctgggagagatcgagaccaaattcaatcagtcgattgttcac
ccgggtgagatggtgggtgctctggctgctcagtctctgggtgagcctgccactcagatg
accctgaacaccttccactacgccggtgtgtcggcgaagaacgtcaccctgggtgttcct
cgactcaaagagctgatcaacatctccaagcgtcccaagactccgtccttgaccgtgttc
ctgctgggccaggcggcccgcgacgccgagcgcgccaaagacatcctgtgtcgcctggag
cacaccacgctgcgcaaggtcacggccaacactgccatctactacgaccccaacccgcag
agcacggtggtgtccgaggatcaggagtgggtgaacgtttactacgagatgcccgacttc
gacgtgacccgcatctcgccctggctgctgcgcatcgagctggatcgcaaacacatgact
gaccgcaagctctccatggagcagatcgctgagaagattaatgcaggttttggtgatgat
ctaaactgcatcttcaacgacgataacgctgagaagctggtgctgcgtatccgaatcatg
aacagcgacgagaacaagttccaggaggacgaggaggtggtggataagatggacgacgac
gtgtttctgcgctgtatcgagtccaacatgctgacggacatgaccctgcagggcatcgag
cagatcagcaaggtgtacatgcatcttcctcaaaccgagaacaagaagaagaccataatc
actgaggacggagagttcaaagcgctgcaggaatggattctggagacggacggcgtcagt
cttatgagagtcctcagcgagaaggacgtcgaccctgtcaggaccacctctaacgatata
gtggagatcttcactgtgctcgggatcgaggcggtgcgtaaggccctggagagagagttg
taccacgtcatctccttcgacggttcctacgtgaactaccgccaccttgccctcctgtgc
gacaccatgacctgtagaggtcacctgatggccatcacgcgtcacggcatcaacagacag
gacaccggaccgctcatgaagtgctcttttgaagagacggtggatgtcttgatggaagcg
tcgtcccatggggaatgcgatcccatgaaaggcgtgtctgaaaacatcatgctcggacag
ctggctcctgcaggcaccggctgcttcgacctgctgctggatgctgagaaatgcaaatac
ggcatggagattcccaccaacatccccgggatcagcgtggctggaccaacgggaatgttc
ttcggctccgcccccagccctatgagtggcatgtctccagccatgacaccctggaacacg
ggggccaccccagcttacggcgcatggtctcccagcgtgggaagcggaatgactccagga
gccgcaggattttcacccagtgccgcctccgacgccagcggcttctctccgggttactcg
cccgcgtggtctcctacgcccggctctcctgggtctcctggtccggccagtccttacatt
ccctctccaggtggagccatgtctccaaactattcgccgacgtctccggcgtacgagcca
cgctccccgggaggctacaccccacagagccccggctactcgcccacgtctccgtcttac
tctcccacgtctccttcctactctcccaccagccccaactacagcccaacctctccatct
tattctcccacctctccatcctactctccgacgtccccgtcgtattcccccacctccccg
agctattcgcccacatcgccctcttactcccccacctctccgtcctattcccccacctct
ccgtcctactctccgacgtctccgtcgtattccccgacttcgccctcttattcacccacg
tctcccagctacagcccgacgtccccgtcgtattcgcccacctctccgtcgtactcgccg
acttccccctcgtactccccgacctctccttcttattccccgacgtcgccctcgtattcg
ccgacgtctcccagctacagcccgacctcacccaattacacgcccacttcgcccagctac
tcgcccacgtctccgtcttacagccccacctcgccttcgtactcgcccacgtctccgaat
tacacgcccaccagcccgaattattctcccacgtccccgtcttactcccccacgtctcct
tcctactccccgtccagtcctcggtacacgcctcaatctcccacgtacaccccgagctca
ccctcttacagcccgagctccccatcttactcccccacgtctccgaaatacacccccacg
tctccgtcatacagccccagctctccagaatacacccccacttcgcccaagtactcgccc
acttcgcccaagtactcgcccacttctcccaaatacagcccgacgtctccgacttactcg
cccacgacgcccaagtacagccccacgtctccgacgtactctccgacgtctcctacctac
accccgaccagccccaagtactcgcccacttcgcccacgtactccccgacgtctccgaaa
tactccccgacttcgcccacgtactcgcccactagtcccaaaggctcgacttacagcccg
acctcgcccgggtacagtccgacgtctccgacctacagtccggccatcagccccgacgac
agcgacgaggaaaacaactga
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integrated database retrieval system
