Ictalurus punctatus (channel catfish): 108273827
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Entry
108273827 CDS
T04658
Symbol
si:ch211-141o9.10
Name
(RefSeq) probable endonuclease 4 isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108273827 (si:ch211-141o9.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108273827 (si:ch211-141o9.10)
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
108273827 (si:ch211-141o9.10)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
108273827 (si:ch211-141o9.10)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Pox_Ag35
Ntox15
Motif
Other DBs
NCBI-GeneID:
108273827
NCBI-ProteinID:
XP_017338892
Ensembl:
ENSIPUG00000001483
UniProt:
A0A2D0S819
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All DBs
Position
13:12941166..12948959
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AA seq
332 aa
AA seq
DB search
MGPHKRGEKRRKERDLVKMEEVEDSAELGEPSEDGTEEMAREKKGRTEEQKKYIGAHVSI
AGGIWKAVEASVDMGGHSFGLFLGSQRTWQRPALDQTAAVKFQQACTQHGFDPKQILPHG
SYLMNCGSPKEDIFAKSQAMLVDELSRCSVLGLTQFNFHPGASMGSSKEQCFERIAQAIN
HAHQQIPAVCTVLENMSGQGSTVGGQFNELKSIIDHVRDKTRVGVCLDTCHAFAAGYDIS
SAGGVKSVLDEFDQVVGLHYLRAVHLNDSKGKLGCHLDRHEDIGRGKIGISAFRNIVNEP
RLDNIPLILETPGRPGFEYAEQIKLLYSLCED
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgggtccacacaaaagaggagagaagaggagaaaagaaagagatctggtaaaaatggag
gaagttgaagactcagctgaattaggtgaaccatcagaagacggcactgaagaaatggcg
agggaaaagaaaggaaggactgaagaacaaaaaaagtacattggtgctcatgtctccatt
gcaggaggcatatggaaagcagttgaagcaagtgtagacatggggggtcacagttttgga
ttatttttgggttcccaacgcacttggcaaagacctgcccttgatcagactgctgcagtg
aaattccagcaggcatgtactcaacacggctttgacccaaaacagattctgccacatgga
tcttacctgatgaactgtggctctcccaaggaagatatatttgctaagagccaggccatg
ctggttgatgaactcagtcgttgcagtgtgttgggcctcactcagttcaacttccaccct
ggggcctccatgggctccagcaaagagcagtgcttcgagagaattgctcaagctatcaac
catgctcaccagcaaatacctgcagtctgtaccgttcttgaaaatatgagtggacaggga
agcactgtgggtggacagtttaacgagctgaagagcataattgaccatgttcgagataag
actcgtgttggagtatgtctagacacatgccatgcattcgcagcaggttatgacatttct
tcagcaggaggagtgaagtctgtgcttgatgaatttgaccaggtggttggacttcactac
ctgagagctgttcatctcaatgactcaaaaggtaaattgggctgccatttggatcgccat
gaggacatcggccgtggaaagattggcatctctgctttccgaaacattgtgaacgagcct
cgactcgacaacatccctctcattcttgagacccctggccgcccaggttttgaatatgct
gagcaaataaagctcctgtattctctctgtgaggactag
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