Ictalurus punctatus (channel catfish): 108273951
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Entry
108273951 CDS
T04658
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108273951 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ipu03310
]
108273951 (rorc)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108273951 (rorc)
Nuclear receptors [BR:
ipu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
108273951 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
4HBT
4HBT_2
FlK
Motif
Other DBs
NCBI-GeneID:
108273951
NCBI-ProteinID:
XP_047012618
Ensembl:
ENSIPUG00000008978
UniProt:
A0A979EXL4
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Position
1:17293192..17338835
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AA seq
721 aa
AA seq
DB search
MILRCLHAVRRFIPHYPTLCQDAVSRRSLVTIPELWYSARVSARGLSKMSLWPFSVSPWD
FSQPNASWNAEMQDVYDRYNALCEVNVEETEKRPWRKLPSYNRSLKYVTGGVYLSKIIQS
KARLFTRNIKEHGAAFEYVVFMNKQEKRCVCVFQAGHLLEGPPGHVHGGAIATMIDTVTG
TLAGYLVGPVMTANLNINYRSPVPLGSVVVLHSALDRIEGKKIFVTCRMTSTDESKLHTE
ATAHIEVIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYSCSRQSNCLIDRASRN
RCQSCRLKKCVAQGMSRDAVKFGRMSKRQRDSLFAEVERHQQQQQQQQCLQASQTEPEPL
PAYRPSKEPRGRSTHLIQPLVPTFPYTLDSDLNCSSEVHPYQGSATGEAQAAALAYRSSQ
RGGESSSFSTLRGFDSRRSTPEAILSIPGNEMGLRAFDTEGLFCPYPTSTHIEELCASIF
RSHRETSQYRAEELQALRWKIFGREEVHAYQNKSMDEMWQHCAVRLTDAVQYVVEFAKRI
PGFRQLGQNDQIALLKSGSMEVVLVRMSRIFNTENSTVFFDGKFAGPELFKSLACGDFIA
SVFDFAHSLCALRLTEQQVALFSALVLINADRPCLEDRDRVLRVRKDVELALSHILHRDN
QESLLHKLYQKMTLLKSLCTLHMEKLRWFRQYYPLTVHSLFPPLYKELFVSDTDMHTMVT
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgatactacgctgtttacacgccgtgaggaggtttattcctcattatcctacactgtgt
caggatgctgtctctaggcggtctctagttacaatcccggagctttggtactcagcacgc
gtaagcgcgcgaggcctgtcgaagatgtcgctatggcccttcagtgtgagcccatgggac
ttcagccagcccaatgcatcctggaatgcagagatgcaggacgtttatgatcgttataat
gcactgtgtgaggttaatgttgaagaaaccgagaagaggccttggcgcaagcttcccagt
tacaaccgctctctcaaatatgttacaggaggagtatacttgagtaaaataatccagtct
aaagctagactcttcacaaggaacataaaagagcatggggcagcgttcgagtatgtggtt
tttatgaacaagcaggagaagagatgtgtgtgtgtgttccaggctgggcatctactggag
ggacctcctggacatgtgcatggtggagcaatcgctaccatgatcgatacggtgacaggt
actctcgctggttacctggttgggcctgttatgactgccaacctcaatatcaactatcgc
agtccggtaccactgggtagtgtagttgtgcttcacagtgctctggatcggattgagggc
aaaaaaatctttgtaacctgtagaatgaccagcactgatgaatccaaattacacacagag
gctacagctcatattgaggtcattccctgtaagatctgcggagacaagtcatcaggtgtg
cactatggagtcatcacctgtgagggctgcaagggcttttttcgaaggagccagtcatcc
agtgtgcaatattcttgctctaggcagagtaactgcctcattgaccgcgccagcaggaac
cgctgccagagctgccgcctcaagaaatgtgttgcccagggaatgagccgagatgcggtg
aagttcggccgcatgtctaaacgtcagagagattctctttttgctgaggtggaaaggcat
cagcagcaacagcaacaacagcagtgtctccaggccagtcaaactgagcccgagcctcta
ccagcctacaggcccagcaaagagccccgaggtcgctcaacacatttaatccagcccttg
gttcccaccttcccctacaccctggactcagatctcaactgctcttcagaggtacatccg
tatcagggcagtgccacaggcgaggcccaggctgcagctttggcctacagaagttctcaa
aggggtggagagagcagcagcttttcaacactgagaggctttgactccagaagatctaca
cccgaggcgatcctgagcattccaggaaatgaaatgggattacgagcttttgacactgaa
ggcttgttctgcccctaccctacgtcaacgcacatagaggagctgtgtgcaagcattttc
cgttctcacagggagacgagtcagtatcgtgcagaggagctgcaggctcttagatggaag
atcttcggcagggaggaggttcatgcctaccaaaacaaatctatggatgagatgtggcag
cactgcgcggttcgtctgacagatgcggtacagtacgtggtggaatttgcaaagcgcatt
ccaggcttccgtcagcttggtcagaatgatcaaattgcccttctcaagagtggttcgatg
gaagtagttctggtccgcatgagtcggatatttaatactgagaacagcacagtgttcttt
gatggcaaatttgctggacctgagcttttcaagtctcttgcatgtggtgatttcattgca
tcagtatttgactttgcccacagtctttgtgctctgaggctgacagagcagcaggtggcg
ttgttcagtgctcttgtgctcataaatgcagatcgtccatgtctggaggacagagacaga
gtgctgagagtgagaaaagatgtggaattggccctcagtcacatcctgcacagagacaac
caagaaagtttactgcacaagctataccagaagatgacattgttgaaaagcctgtgtact
ctgcatatggagaagctgcgctggttcaggcagtattacccactgactgtgcactctctc
ttccctccactttacaaggagctgttcgtctcagacactgatatgcacacaatggttacg
ctctga
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