Ictalurus punctatus (channel catfish): 108273980
Help
Entry
108273980 CDS
T04658
Name
(RefSeq) serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu04261
Adrenergic signaling in cardiomyocytes
ipu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108273980
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108273980
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
108273980
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108273980
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108273980
03036 Chromosome and associated proteins [BR:
ipu03036
]
108273980
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108273980
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108273980
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108273980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Y_phosphatase2
Motif
Other DBs
NCBI-GeneID:
108273980
NCBI-ProteinID:
XP_017339198
Ensembl:
ENSIPUG00000006375
UniProt:
W5UID0
LinkDB
All DBs
Position
13:complement(21567307..21594401)
Genome browser
AA seq
447 aa
AA seq
DB search
MAGVGGGNDFQWCFSQVKGAVDEDVAEADIISTVEFNYSGELLATGDKGGRVVIFQREQE
SKNRTLSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIK
LWKISERDKRAEGYNLKDEDGRLRDPFRITTLRVPVLMPMDLMVEASPRRIFANAHTYHI
NSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAECHPHQCN
VFVYSSSKGTIRLCDMRAAALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYM
MTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTG
SYNNFFRMFDRNTRRDLTLEASRENSKPRAMLKPRRVCTGGKRKKDEISVDSLDFNKKIL
HTAWHPKENVIAVAATNNLYIFQDKIN
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcaggggtcggtggagggaacgacttccagtggtgtttctcgcaggtgaaaggagca
gtcgatgaagacgtggctgaagcggacattatctcaacagttgaatttaactactcgggg
gaattactagctactggggataaaggaggaagagttgtcatatttcagagggaacaagag
agtaaaaaccgcactctctcaagaggagagtacaacgtgtacagcactttccagagtcac
gaacctgaatttgattatttgaaaagtttagaaatcgaggagaaaatcaataaaatcaga
tggctaccacaacagaatgccgctcacttcctgctctccacaaacgacaaaaccattaag
ctgtggaagatcagtgaacgggacaaacgagcagaaggctacaatctgaaagacgaagac
gggcgtctcagagatccgttcagaatcacgacactaagggtaccggtgttgatgcctatg
gacctgatggtggaggcgagcccacgcagaatattcgcaaacgcacacacctatcacatc
aactccatttcagtaaatagtgatcatgaaacatacctttctgcagatgacttaagaata
aacctatggcacttagaaatcacagatagaagttttaatattgtagatataaagcctgcc
aacatggaggagctgacggaggtgatcacggctgccgagtgccaccctcaccagtgcaac
gtgttcgtctacagcagcagcaagggcaccattcgcctgtgtgacatgcgggcagcagct
ctctgtgatagacatagcaaattttttgaagaaccagaagatccgagcagccggtcgttt
ttttcggaaatcatctcctctatatctgacgtcaagttcagccacagcggtcgatacatg
atgactcgagactatctctctgtgaaggtgtgggacctaaacatggaaaaccggccagta
gagacctaccaggtacatgaatacctacgtagcaagctgtgctcattgtatgagaatgac
tgcatttttgacaagttcgagtgctgctggaatggatctgacagtgccatcatgacaggc
tcgtacaacaacttcttcagaatgttcgacaggaacacgcggcgtgacctcacactggag
gcgtcgcgtgagaacagcaaaccacgggccatgctcaaaccgcgccgagtgtgcactggt
ggcaagaggaagaaggacgagatcagcgtggacagcctggacttcaacaagaagattctg
cacacggcttggcatcctaaagagaatgtcatagccgtggccgccaccaacaatctgtat
atattccaggacaaaataaactaa
DBGET
integrated database retrieval system
