Ictalurus punctatus (channel catfish): 108273988
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Entry
108273988 CDS
T04658
Symbol
rab40b
Name
(RefSeq) ras-related protein Rab-40B
KO
K07928
Ras-related protein Rab-40
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108273988 (rab40b)
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
ipu04031
]
108273988 (rab40b)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul5 complex
Target recognizing subunit
108273988 (rab40b)
GTP-binding proteins [BR:
ipu04031
]
Small (monomeric) G-proteins
Rab Family
Rab40
108273988 (rab40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
SOCS_box
Arf
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
108273988
NCBI-ProteinID:
XP_017339214
Ensembl:
ENSIPUG00000012488
UniProt:
A0A2D0S8Z2
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All DBs
Position
13:complement(16917805..16928169)
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AA seq
278 aa
AA seq
DB search
MSHRSSPAKAYDFLLKFLLVGDSDVGKGEILASLQDGATESPYGYNMGIDCKTTTILLDG
RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDITNRWSFDGIDRWIKEIDEHAPGVP
KILVGNRLHLAYKRQVTTENAKAFAERLGVTFFEVSPLCNFNITESFTELARIVLMRHGM
ERLWRPNKVLSLQDLCCRSIVSCTPVHLVDKLPLPVALKSHLKSFSMANGLNARMMHGRS
YSVIASSGAKRNGTKKSKLIYPPLSPSQSCTRTTCKIS
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgagccacaggagcagtccagctaaagcgtatgatttcctgttgaaattcctgcttgtg
ggagacagtgatgtgggcaagggcgagatcttggccagtttgcaggatggggctacagaa
tcaccttatggatataacatggggattgactgcaaaaccaccaccatactgcttgatggg
cgtagagtcaaactgcagctttgggacacgtctggacagggacgtttctgcaccatattc
cgctcgtactccagaggagcacagggtgttatccttgtctatgacattacaaatcggtgg
tcctttgatggaattgacagatggattaaagagattgatgagcatgcaccaggagtccct
aagatccttgtggggaaccgtctgcacttggcctacaaacgtcaggtgacgactgaaaat
gcgaaagcctttgctgagcggctgggtgtcaccttttttgaagtcagccctctgtgtaac
ttcaacatcactgagtccttcacggagttggctcgcatagttctaatgcgccatggcatg
gagagactctggagacctaacaaagtgttgagtctgcaggatctgtgctgccgatccatc
gtctcctgcacccctgtgcacctggtggacaaactcccgcttcctgttgccttaaagagc
cacctgaagtccttttccatggccaacggcctcaacgcccgcatgatgcacggacgctcc
tactccgtcatagccagcagcggcgcgaagaggaacggaacaaaaaaatccaaactcatc
tacccacccctgagcccgtcacagagctgcacaaggaccacatgcaagatatcgtag
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