Ictalurus punctatus (channel catfish): 108274183
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Entry
108274183 CDS
T04658
Symbol
prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00310
Lysine degradation
ipu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108274183 (prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108274183 (prdm9)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108274183 (prdm9)
Enzymes [BR:
ipu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
108274183 (prdm9)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
108274183 (prdm9)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
108274183 (prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
108274183 (prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
PRDM2_PR
zf-H2C2_2
zf-C2H2_4
SET
zf-C2H2_3rep
Motif
Other DBs
NCBI-GeneID:
108274183
NCBI-ProteinID:
XP_017339657
Ensembl:
ENSIPUG00000011791
UniProt:
A0A2D0SA98
LinkDB
All DBs
Position
13:6236952..6248465
Genome browser
AA seq
865 aa
AA seq
DB search
MADSPGLPSGEDQNLEIQGSVTVCNIETEESQEEYAFNDKHFYCETCHKMYLDQCEVHGP
PLFTYDSPTPMGVPQRALLTLPQGLVIGRSTTPGAGLGVFNQGQIVPLGMHFGPFDGEVI
NMEKALESAYSWMICSGSDQYDYIDAERDTHSNWMRYVVCSRNENEQNLVAFQQGGRILF
RCCRSIYPGQELKVWYAEDYAQSLSTTWDKIWDKKCTPIGRSDEDASQLCLCPYCQYSFP
AAFYLHRHVRRSHPDEYPHLLEAQALEPTDQTPVMNLDHCLLASDAPPPSQMQQMTKSFH
SQFPTLSGQTEQSNPTDLPHEISSDLMNKTDQGNTSVVEVSRNKCGECGRIFLRSCHLKR
HQRTIHSKEKPYCCSHCRKCFSQATGLKRHQQTHQGEKERKTGTQQAEKEDAVYPCSKCS
VSFITKLNLYRHLKRHHHGEYLKLVENESFNAESALQHENSSDKHDPPYEPPAKLRKSAL
NSNRAGNQKRKVPTGRPRGRPPKIKKKQIQKPVKDTAQEENQNNCSEADQTAPDNESTAA
SQWTNAGSKQPQETPQETSSHVCGECLRTFSHLHLLKSHDCIQQGDGPHGCSRCELYFSR
LCNLRRHERTIHAKERPYCCTLCLKSFTQSSGLKRHQESHSRHRAHRQSTALANATIYPC
SHCPFSFTGERYLYKHIRRHHPEMTTKYLSFNEGDIPSKEHSCTQCSKTFQTIRGFKNHA
CFRQGDQLYLCPDCGKAFSWFNSLKQHQRIHTGVKPYACSQCDKSFVHSGQLNVHMRTHT
GEKPFLCAECGESFRQSGDLRRHEQKHSGVRPCQCPDCGKSFSRPQSLRAHQQLHKGTKL
FPCTQCGKSFARRYHLTRHHQKMHS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagtccaggattgccatcaggtgaagaccagaatttagaaatacagggctct
gtgactgtctgcaatatagaaacagaggagagccaagaagaatatgcttttaatgataag
catttctactgtgaaacctgccataaaatgtatttagaccagtgtgaggttcatggccca
ccattgttcacctatgactctcccacacctatgggagttcctcagagggctcttctcact
cttccccaaggcttagtcataggtagatcaacaactcctggggctggactaggtgttttt
aaccagggacaaattgttcctcttggaatgcattttgggccttttgatggagaggtcatc
aacatggaaaaggcactagaaagtgcttattcgtggatgatatgctctgggagtgaccag
tatgattacattgatgcagagagggacactcattcaaattggatgaggtatgtagtttgt
tcacggaacgagaatgagcaaaacttggtggcatttcagcagggtgggcgcatcctgttc
cgctgctgccgctccatctaccccgggcaagagctgaaagtgtggtatgcagaggactac
gcacaaagccttagcaccacatgggataaaatctgggacaagaagtgcacacctatagga
agaagcgatgaagatgcctctcagctttgtctttgtccctactgtcagtactctttccca
gcagctttttacctacacagacacgtcaggcgctcacacccagatgagtacccacacctg
ctggaagcccaagctcttgagcctactgaccagacaccagtcatgaatttggatcattgc
ctacttgcctctgatgcaccacctccatctcaaatgcagcaaatgacaaaatcctttcat
agccaatttcctaccctcagtggccagacagagcaatcaaacccaactgatttgccacat
gaaattagcagtgatttgatgaacaaaacggaccagggaaataccagtgttgtcgaggtc
tcaaggaacaaatgtggtgaatgtgggagaatatttttgcggtcgtgccacttaaaaaga
catcaacgcacaattcattcaaaagagaagccttattgctgtagccactgcagaaaatgc
tttagtcaggcaacagggctgaagagacaccagcagacccaccaaggtgaaaaagagaga
aaaactggcacacagcaagctgagaaagaggatgctgtgtacccgtgttctaagtgctct
gtctctttcataaccaaactcaacctctacagacatctcaaaagacatcaccatggagag
tatctaaaactagttgaaaatgaatcttttaatgctgagtcagcattgcaacacgaaaac
tcatcagacaaacatgaccctccttatgagccaccagccaagcttcgaaaatcagcttta
aactctaatagggctgggaatcagaagaggaaagtacctacgggccgacctcggggcaga
ccccccaaaataaaaaaaaaacaaatccagaagccagtcaaggacacggctcaagaggag
aatcagaacaattgttcagaggctgatcagactgctcctgacaatgagagtacagcagct
tcacagtggactaatgcaggcagcaaacagccacaggaaacgccacaagagacctcctca
catgtttgtggcgagtgcctaagaaccttcagccacctccatcttctgaaaagccatgac
tgcattcagcagggcgatggacctcatggctgctctcgctgcgaactctatttcagccgt
ctgtgcaacctgcggcgacatgaacgcaccatccatgccaaagagaggccctactgttgc
acactgtgccttaagtccttcacgcagtcttctggcctgaaacgccatcaggaaagccac
tctcgccacagagcccatcgccagagcacagcactggccaatgccaccatctacccctgt
agccactgccccttctcctttaccggcgagcgatacctgtacaaacatatccgccgccac
cacccagagatgactacaaagtacctgagctttaatgagggtgatataccatccaaggaa
catagctgcactcagtgctccaagacctttcagacaattaggggtttcaagaaccatgct
tgcttcagacaaggggaccagctgtacctgtgtcctgactgtggtaaggccttcagctgg
ttcaacagtttaaagcagcaccagcgcattcacacaggggtgaaaccttatgcatgctca
cagtgtgataagagttttgtgcactcaggacaactgaacgtccatatgcgcacacacact
ggggagaagccattcctttgtgctgagtgtggtgagagctttaggcagtcaggtgacctg
agacggcatgagcagaagcactcaggtgtgcggccgtgtcagtgccctgactgtgggaaa
agttttagtcggccacagagtctcagggcccaccagcagcttcacaagggcaccaaactg
ttcccttgtacacagtgtggcaaaagctttgcccgccgttaccaccttacccggcatcat
cagaaaatgcactcttga
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