Ictalurus punctatus (channel catfish): 108274231
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Entry
108274231 CDS
T04658
Symbol
tob1b
Name
(RefSeq) protein Tob1b
KO
K14443
protein Tob/BTG
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108274231 (tob1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108274231 (tob1b)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108274231 (tob1b)
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108274231 (tob1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTG
PAM2
T2SSM
SinI
Ig_GEX2_N
Motif
Other DBs
NCBI-GeneID:
108274231
NCBI-ProteinID:
XP_017339744
Ensembl:
ENSIPUG00000005837
UniProt:
A0A2D0SAJ1
LinkDB
All DBs
Position
13:10154582..10158130
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AA seq
369 aa
AA seq
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MIEKTSFVLWREKSASCSPQTDHLLPRRFLQRSAHEGTHACNWEAAMQLEIQVALNFIIS
YLYNKLPRRRVNIFGEELERQLKKKYEGHWYPDKPYKGSGFRCIHVGEKVDTVVEEAAKE
SGIDIEDIRNNLPQDLSVWIDPFEVSYQIGEKGSIKVLYVDDTGENGSELDKEIRNSFNP
DAQVFMPISDPVGVSSESSSPSPPFGQSASVSPSFMPRSTQPLTFTTATFAATKFGSTKM
KNGSRSGSKVARTSPTNLGLNVTSLLKHKAISNSMHSLYGLGLGGQPKASALSPNAKEFV
FPNLQSQGSSTTMFSNENPLSLSPLQYNNAFDVFAAYGSLNDKSLMDGLNFSLSNMQYSN
QQFQPVMAN
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgatagagaagacttcctttgtcctgtggagggagaaatcagcgtcctgttcgccacaa
actgatcacttactgcctaggaggtttttgcaacgctcggctcacgaaggcacacacgct
tgcaactgggaagcagctatgcagcttgaaatccaagtagcactcaacttcataatatcc
tacctgtacaacaaactccctcgacgtcgggtgaacatcttcggggaagagctcgaacgg
cagttgaaaaagaaatatgaagggcactggtaccccgacaagccatacaaagggtccggg
ttcaggtgtatacatgtcggggagaaggtcgacacggtagtggaagaagcagccaaagag
agcgggattgacatcgaagacattcggaacaacttgcctcaggacctcagtgtgtggatc
gacccgtttgaggtgtcctaccagattggggagaagggatccattaaggtgctttacgtg
gatgataccggcgagaacgggtcagagttggacaaggagatcaggaacagttttaacccc
gatgctcaggtcttcatgccaatcagcgatcctgtaggggtctcctctgagtctagctcc
ccgtcaccaccgtttggtcagtctgcttctgtcagcccgtcattcatgccacgctccact
caacctttaactttcaccacagccacgttcgccgccaccaagttcggctccaccaaaatg
aagaacggcagccgcagtggtagcaaggtggcacgcacatctcccaccaacctgggcctg
aatgtgaccagcctactgaagcataaagccatttccaattccatgcattctctctacggt
cttggtctcggagggcagccgaaggcttccgcgctctctcctaacgccaaggagtttgtt
ttccctaaccttcagagccagggcagctccaccacgatgttcagcaacgagaatccgctc
agcctcagccctctgcagtacaacaatgccttcgacgtgtttgcagcctacgggagcctc
aacgacaagtctctcatggatggtctaaacttcagcctaagcaacatgcagtattctaac
cagcaattccagccagtcatggctaactaa
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