Ictalurus punctatus (channel catfish): 108274234
Help
Entry
108274234 CDS
T04658
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108274234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108274234
03012 Translation factors [BR:
ipu03012
]
108274234
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108274234
Translation factors [BR:
ipu03012
]
Eukaryotic type
Release factors
108274234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
108274234
NCBI-ProteinID:
XP_017339748
Ensembl:
ENSIPUG00000001655
UniProt:
W5USH7
LinkDB
All DBs
Position
13:complement(12866427..12876796)
Genome browser
AA seq
564 aa
AA seq
DB search
MDQRDSAPESWEEDDVEAQADTELQSAFTSLNVNAPEFVPSFVPRASPHSTGSHGPDPVT
NMEISEPVAAVENGETDTATAESWEEKGEPDEVEAGGGAMGESGPVREEAQDEMMMEEDE
EMPAPKLPPPLPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKE
KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQ
ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSLDRYE
ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKESSEMCPWYTGLPFIPHLDSLPNFN
RSSDGPIRLPIVDKYRDMGTVVLGKLESGSISKAQQLIMMPNRHTVEVLSLLSDDVETDD
AGPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQIVIIEHKSIICPGYNAVLH
IHTCIEEVQITALICLVDKKTGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMG
RFTLRDEGKTIAIGKVLKLVPEKD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggaccagagagactcggcgcctgagagctgggaggaggacgatgtggaggcccaggcc
gacaccgagctccagtctgccttcaccagcctcaacgtcaacgcaccagagtttgtaccg
tcgtttgtacccagagcgtctccacacagcaccgggtcccacggtccagacccagttaca
aacatggagatctccgaaccagtagctgctgttgagaatggagagacagatactgccaca
gcggagtcatgggaggagaagggtgaaccggatgaggtggaggcaggaggtggggctatg
ggggagagtggacctgttcgggaagaagcccaagatgagatgatgatggaggaggatgag
gaaatgcccgcccctaaacttcctcctcctctcccagatgccccaaagaaggagcatgtt
aatgtggtgttcattggacatgtggatgctggcaagtcgacaattggtggacaaatcatg
tatttgactggtatggtggacaaacggaccctggagaaatacgaaagggaagcaaaagaa
aagaacagggagacatggtatctctcttgggctttagacacaaatcaggaggagagagac
aaggggaaaacagtagaagtcggacgagcatatttcgaaactgagaaaaagcactttacc
atcctggatgccccgggccataaaagctttgtgcccaacatgataggtggagcctcacag
gctgacttggcagtgctggttatctctgccagaaaaggtgagtttgagacaggctttgaa
aagggcggtcagacccgtgagcatgccatgctggccaaaacagctggagtcaaacacttg
atagtcctcatcaacaaaatggacgatcccacagtaaactggagcttggatagatatgag
gaatgtaaagagaaattagtgccatttttaaagaaggtgggctttaatccaaagaaagac
atccacttcatgccctgttctggactgactggagccaacttaaaggaatcttctgagatg
tgtccctggtacacggggttaccatttattccacatctggacagcttgccaaacttcaac
cgatcaagtgatggtcccatcagattgcccattgtagataagtacagggacatggggact
gtggttcttggcaaactggaatcagggagtattagcaaagcacaacagcttatcatgatg
ccaaacaggcacactgtggaggtgctgagcctactgtccgatgatgtagagacagatgac
gcagggcctggagagaacctgaagctacgtctcaaaggcattgaagaagaggagatcctc
ccaggcttcatcttatgcaatgcagagaacctctgccactcagggcgcacgtttgacgcc
cagattgttattattgaacacaaatccattatatgtccaggttacaatgcggtccttcac
atccatacctgcatagaggaagtgcagataacagccttaatctgtctggtggacaagaag
acaggcgaaaagagcaagacgcgtccccgctttgtcaaacaggaccaagtgtgcatcgcc
cgtctcagaacggcaggaacgatctgcttagaaacgttcaaagacttcccgcagatgggt
cgtttcactttgagggacgagggtaaaacgattgctattggcaaagttttgaagttggtg
ccagagaaggactga
DBGET
integrated database retrieval system
