Ictalurus punctatus (channel catfish): 108274281
Help
Entry
108274281 CDS
T04658
Symbol
thbs2b
Name
(RefSeq) thrombospondin-2
KO
K04659
thrombospondin 2/3/4/5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04145
Phagosome
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108274281 (thbs2b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108274281 (thbs2b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
108274281 (thbs2b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108274281 (thbs2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108274281 (thbs2b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108274281 (thbs2b)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108274281 (thbs2b)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Phagocytosis
Opsonins
108274281 (thbs2b)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108274281 (thbs2b)
Exosomal proteins of colorectal cancer cells
108274281 (thbs2b)
Exosomal proteins of bladder cancer cells
108274281 (thbs2b)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108274281 (thbs2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
Laminin_G_3
TSP1_CFP_C
TSP1_CCN
TSP1_ADAMTS
EGF
cEGF
DUF4763
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
108274281
NCBI-ProteinID:
XP_017339850
Ensembl:
ENSIPUG00000015949
UniProt:
A0A2D0SC90
LinkDB
All DBs
Position
13:complement(15798335..15812267)
Genome browser
AA seq
1181 aa
AA seq
DB search
MILRKCHFGLVLLFLCASAIDPEEPVEDVSVFDLFESSGITQRTIGVKLFRGPDPDSPAY
RFIRFDHLPSVKPQALEQLVQQIQNNEGFTLTASLRQDRASRGTLVSIEGPGERRQFELL
SDGRANTLELVYWWADGSRNVIAFEDVELVDSQWKNVTLHVHGETATLYVGCSLIDSYIL
DEPFYEHLHASGGRMYVAKGSSRETHFRGLLQNVQFIFDIPLEDVLESRGCELANTEELN
TVSESAELVDVVSSISTNLISPNTDPPTISPSEMMCERSCEELANLFQELKGLRVVVSNL
IDGLQKVTEENTAMREALNKIQDPVQQSICWQDGRLFENKEDWIVDSCTKCTCQDGKVVC
RQITCPPVSCANPSFVDGECCPVCLPMDSEDGWSPWSEWTQCTVTCGSGTQQRGRSCDDT
SNTCSGPSIQTRRCSLGKCDRRVRQDGGWSLWSPWSSCSVTCGEGLITRIRHCNSPIPQR
GGKDCDGEGRETQSCQAKPCPIDGGWGPWSPWATCSATCGGGLKSRERECNSPAPQHGGR
KCMGDSIDNEVCNKQECPINGCLSNPCFGGVECSTISDGSWECGPCPPGYRGNGTFCEDV
NECNMVSDACHKVGGLQQCVNTDPGFHCLPCPPRYKGSQPYGLGVESAKTNKQVCEPYNP
CKDNTHSCHKNAECIFLSHITEPMYKCECRIGYAGDGIVCGEDFDLDGWPNQDLVCGANA
TYHCKKDNCPTLPNSGQEDLDGDGQGDACDKDDDNDEIVDERDNCPLMYNPRQYDYDKDA
IGDRCDNCPYEPNPAQTDTDNNGEGDACAIDIDADEILNEKDNCPFVYNTDQKDTDLDGV
GDQCDNCPLIHNPQQTDVDNDLIGDQCDNNQDIDEDGHQNNLDNCPYVANANQADHDNDG
KGDACDYDDDNDGIPDDRDNCRLVPNPDQMDANGDGRGDACKDDFDNDNIPDLFDACPEN
NAISVTDFRKFQMVHLDPKGTLQIDPHWVVRNQGKELVQTANSDPGIAVGYDEFSAVDFS
GTFYVNTDRDDDYAGFVFGYQSSRRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNST
TGTGEYLRNALWHTGNTKNQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGK
QIMADSGPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDN
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgattctccgaaaatgccacttcgggctggtccttttgtttctgtgcgcctccgccatc
gatccagaagagccggtggaggacgtgagcgtgtttgacttattcgaaagcagtggaatc
acacagaggaccatcggggtgaaattgttccgaggcccggacccggactccccggcgtat
cgcttcatccgcttcgaccatcttccctcagtcaaacctcaagctctggagcagctcgtg
cagcaaattcagaacaacgagggcttcaccttgactgcaagcctgcgccaggaccgtgcg
tcccgcggcactctggtctccatcgaaggtcccggcgagcgccggcagttcgagctgctt
tccgacggcagagctaatacactcgagctggtgtactggtgggccgacggctcgcgcaac
gtcatcgcgtttgaggatgtcgagctggtggactcgcaatggaaaaacgtcacgttgcac
gtgcacggcgagacggccacgctgtacgtgggctgcagcctcatcgacagttatattctc
gacgaacctttctacgagcacctgcacgcctcgggtggacggatgtacgtggcgaaagga
tccagccgcgagacacattttagggggctgctgcagaatgtgcagtttattttcgacatc
cctctagaggacgttctagagagcagagggtgtgagctggcaaatacagaggagttgaac
acagtgagtgagagtgctgaactggtggatgttgtctcctccatctccactaacttgatc
agcccgaacacagacccaccaacaataagcccctctgaaatgatgtgtgagcgttcgtgt
gaggagttggccaacctcttccaagagctcaagggcctccgagttgttgttagcaacctc
attgatggcttgcagaaagtgacagaggagaacactgccatgcgtgaggctctgaataag
atacaagatccagtgcagcagagcatttgctggcaggatgggcgactgtttgagaataag
gaggactggattgtggatagttgcaccaaatgtacatgccaggatgggaaagtggtgtgt
cgtcagatcacttgcccaccagtatcctgtgccaatccgtccttcgttgatggggagtgc
tgtccagtttgccttccaatggacagtgaggatggctggtctccctggtcagagtggact
cagtgtacggtcacctgtggcagcggtacacaacaaagaggcagatcatgtgacgacacc
agcaatacatgctctggcccctcgatccagactcggaggtgcagtttaggaaaatgtgac
cgcagagttcgtcaggatggtggttggagtttgtggtccccctggtcttcgtgctcagtg
acatgtggggaagggttgatcacacgcatccgccattgcaactcccctattcctcagcga
ggaggcaaagactgcgacggcgaaggacgagagacacagagctgccaggctaagccctgc
ccgattgatggtggctggggcccatggtcgccctgggcaacctgctcagcaacatgtggt
gggggtttgaaaagtcgtgagagggagtgtaatagccctgctcctcagcatgggggccgg
aaatgtatgggcgattctattgacaatgaagtatgcaacaaacaggagtgccccattaat
ggttgtctttcaaatccatgctttgggggagtggagtgcagcaccatttctgatggctct
tgggaatgtgggccttgtccaccaggctaccgtggtaatggaactttctgtgaagatgtg
aatgagtgtaatatggtgtcagatgcatgtcataaagtgggtgggcttcagcagtgtgtg
aatacagacccaggattccactgtttgccctgccctccacgttacaaaggctctcagccc
tatggccttggagtagagtcagctaaaacaaacaaacaggtgtgtgaaccttacaaccca
tgtaaagacaatacccacagttgccataagaacgctgagtgtatctttctcagccacatc
actgagcccatgtacaagtgcgagtgccgtattggttatgctggagatggaattgtgtgt
ggagaggactttgatcttgatggttggcccaatcaggatctggtgtgtggagccaatgct
acataccattgcaaaaaggacaactgcccaacccttcccaactctggtcaagaagacctt
gacggtgatggacagggagatgcctgtgataaggatgatgacaatgatgaaattgtggat
gaacgggacaactgcccactgatgtacaaccctcggcagtatgactacgataaggatgct
ataggggatcggtgtgataactgcccctatgagcccaaccctgctcagactgacacagac
aacaatggtgaaggagacgcctgtgctattgacattgatgcagacgagattctgaatgag
aaagacaattgtccctttgtttacaatactgaccagaaagacacagatttggatggtgtt
ggggaccagtgtgataactgcccactcatccacaacccacagcagacggatgtggataat
gatttgattggagaccagtgtgataataaccaggacatagatgaggatggccatcagaat
aacctggataactgtccctatgttgccaatgctaaccaagcagaccatgacaatgatggt
aaaggagatgcctgtgactatgatgatgacaatgacggaattcctgatgatcgggacaac
tgcaggcttgtgcctaatccagatcagatggatgcaaacggagatggccgtggtgatgcc
tgtaaagatgactttgacaatgacaacattcctgacctctttgacgcgtgcccagagaac
aatgccatcagtgttacggacttcaggaagtttcagatggtgcacctggaccccaaggga
acccttcagatcgacccccattgggtggtgcgaaaccagggcaaagaattggttcagact
gctaactctgaccctggcattgcagtcggctatgatgagttcagtgccgtggatttcagc
ggaaccttctatgtgaacacggatcgggacgatgactacgcaggttttgtgtttggctat
cagtccagtcgacgcttctatgtggtcatgtggaaacagataacacagacctactgggag
gacaagccatcgaaggccttcggtatctctggagtatcactcaaagttgtcaactccacc
actggcacgggagagtacctgcgcaatgccctctggcacacaggcaacactaaaaaccag
gtacgaacactttggcatgatccaaagaacattggctggaaagactacactgcgtaccgc
tggcatcttatccacagacccaagactggtttcattagggttgtagtgtatgaaggcaag
cagatcatggcagactctgggcctgtctatgacaagacatttgctggtggtagactgggg
ttgtttgtattctctcaagagcttgtcttcttctctgacctcaaatatgaatgcagagac
aactga
DBGET
integrated database retrieval system
