Ictalurus punctatus (channel catfish): 108274507
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Entry
108274507 CDS
T04658
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin beta-15
KO
K16499
protocadherin delta 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108274507 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
ipu04515
]
Cadherins
Protocadherins
108274507 (si:ch73-233f7.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Nodulin_late
Motif
Other DBs
NCBI-GeneID:
108274507
NCBI-ProteinID:
XP_017340201
Ensembl:
ENSIPUG00000008723
UniProt:
A0A2D0SCK7
LinkDB
All DBs
Position
14:9000674..9011168
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AA seq
1000 aa
AA seq
DB search
MEQGHERRQWTSAWSAFRLLMCVCALDRVLAQIRYSVLEEREHGAFVGNIAEDLGLDVSR
LSARRFRIVSGARKQYLEVNLENGILFVNEKIDREELCEQSPVCYLHLQVVIENPLELYR
VEVEILDVNDNAPSFPWSEFNLEVTESAAPGSRFPLESAQDLDAGSNSLRSYLLSANQHF
VLDVQTRNDGSKFAELVLESPLDREKQKMHEMVLTAVDGGSPLRSGTAQIMVTVLDANDN
VPVFDRSVYRVSLVENAPRGTLVLKLNATDLDEGSNGEIVYSFSGHAPLKVRELFSVDSF
SGEIRVKGIVDYEKASVYELYVQAKDKGPSAVAVHCKVLVDILDVNDNAPEVILTSVSTP
VQEDAPPGTVIAVISVMDRDSGENGAVDCQIPSHVPFRLHSSFKNYYTLATSEFLDRELV
AEYNITLTARDLGSPPLSTGKTIHVLVSDVNDNPPRFLQPSYTVYVTENNAPGASICSVS
AVDPDSNQNAYLSYSILEGQIRGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQIRVQAR
DAGFPPLSGNVTVSVFVLDQNDNAPLVISPLPKNGTAATETVPRSADAGYLVAKITALDA
DAGQNSRLSYQVLHATDPGLFSIALYTGEIRTIRRFVDKDATRHRLVILVKDNGQPSLSA
TVSLILTLVDGVPESLSDLDDHAISRRAPSNLAFYLIISLSVVSLVFLVAIIVLAALKCY
KDRDCPGDFGLSSIGAACCTLESEPPAEACKKSNLNLQISTGTKVPTNCVESSTGTTAQN
YCYKVCLTPESAKSDFMFMKSYSLNTPRNNAEAEKMARSSQSRGTANNGATTPNELKQDN
TNWALTKNQTSTLKSYNSINMDGTLMKKVMQTDSENYVSPVAAGQYWTWGTRMRECKMSS
PATGLHERAWTPRYTPTKTPQQQQPSGQTHSHPPPDYQHNVYIPGTPSALCTLRPSNRSE
LDVHNTFSTFGKKRKFISPSSYDPRDETGTEVINNDLYNE
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagggcacgagaggaggcaatggacatcagcgtggtcagcttttcgcctgctt
atgtgtgtgtgcgcgttggaccgggtgctcgcccagattcggtactcggttctggaggag
cgcgagcacggcgcatttgttggtaacattgccgaggacttgggcttggatgtctccagg
ttgtctgccaggcgattccgcatagtgtccggagctaggaaacaatatttagaggtcaat
ttggaaaacgggattttgtttgtgaacgagaagattgatcgagaggagttatgcgaacag
agtccggtttgttacttgcacttgcaggtggtcattgaaaacccactggaactgtaccga
gtggaagttgagatcttagacgttaacgacaacgctccgagttttccgtggagcgagttc
aacctagaggttaccgagtctgcagcgccgggctcacggttcccactcgagagcgcgcaa
gacctagacgcgggatccaactcactccgctcgtacctgctgagtgctaaccaacacttt
gtactggacgtgcagacgcgcaacgacgggagcaagttcgcagaactcgtgctggagtct
cccttagaccgagagaagcagaaaatgcacgaaatggtcctaaccgccgtggacggcggc
tctccgctgcgctctggcactgctcagatcatggttacagtactggatgcgaacgataat
gtccctgtattcgacagatctgtttaccgggtgagcctggtggagaacgcaccgagagga
acgctagtgctcaagctcaacgccacggatctggatgaaggctcgaacggcgagatcgtc
tattcattcagcggtcacgcgcccttgaaagtgcgcgagctgttcagcgtagattctttt
tcgggtgaaattcgggtgaaggggattgtagattacgaaaaagccagcgtctatgagctc
tatgtgcaggctaaagacaaaggtccctctgctgtggccgtgcactgtaaagtacttgtc
gatatattggacgtgaacgacaacgcgccagaggtcatcctgacctctgtctccacacct
gttcaggaagacgcgcctccggggaccgtgatagccgtgatcagtgtcatggatcgtgat
tccggagaaaacggagcagtggactgtcagatccccagccacgtcccttttaggcttcac
tcgtcctttaaaaactattacactctggcgactagcgaatttctggacagagagttggta
gccgaatacaacatcactctcacggcgcgagatttaggatcgccaccgctctccaccggg
aaaactattcatgttcttgtgtcggacgttaatgacaatcctccgcgcttccttcagccg
tcctacaccgtctatgtgaccgagaataacgcaccgggcgcttccatttgctctgtgagc
gcagtcgatccggactctaaccagaacgcctatctatcctactctatcctggagggtcaa
ataaggggcatgccggtgtccacgtatgtttctattaactcggacaatggcaacatttac
gctcttcgctccttcgactacgagcagctccgcaactttcagatccgagttcaggcgcgg
gacgccggtttcccgccgctgagcggaaacgtgactgtaagcgtgtttgttttggaccag
aacgacaacgcaccactagtcatttccccgctgccgaaaaacggcacggcggctactgag
acggtgccgaggtcggcggacgcaggctacctcgtagcaaaaataacagcgctggacgcg
gacgccgggcaaaactctcgtctctcgtaccaagtgctgcacgccacggacccggggctg
ttcagcatcgcgctttacacgggtgaaattcggaccatccgccgcttcgtagacaaagac
gccacaagacacagactcgttatattggtcaaggacaatgggcaaccctctctttcggcc
accgtatctctcattctgacgctagtggacggcgtgccggagtcgctgtcagacctcgat
gaccatgctatcagccgccgagcgccttctaacctcgccttctatctgatcatctcattg
agcgtggtatcgctcgtcttcctagtagccatcatcgtactggcagcgctgaagtgctac
aaagaccgggactgtcctggagatttcggtctgtcctctatcggtgctgcgtgctgcaca
ctcgaatccgagccgcccgccgaagcatgcaaaaagtccaacctgaatctgcagatttcc
accgggacgaaagtgcctacgaactgtgtggagagcagcaccggaaccacggctcagaac
tactgctacaaggtgtgcctgacacccgaatcagccaaaagtgacttcatgttcatgaaa
tcttacagtctgaacacgccgagaaataacgcggaggctgaaaagatggcgcggagctca
cagagccgcggtacggcgaataacggagcgacaactcctaacgagttaaaacaagacaat
actaactgggctcttaccaagaaccaaacatcaactttgaaaagttataactcaatcaat
atggatggcactctcatgaagaaggtcatgcagactgattctgagaactatgtaagtcca
gtggctgcaggacagtactggacatggggaacacgaatgagagagtgcaaaatgtcttcc
cctgctaccggcctccatgagcgggcatggacaccccgctacacccccacaaaaactccc
caacagcagcagccttcaggtcaaacacatagtcatcctccacctgactaccaacacaat
gtctacatccctgggactccatctgccctctgtaccctgcggcccagtaaccgcagtgag
ctcgatgtccacaacaccttctccacctttggcaagaaacgcaagttcatttcccccagc
agttatgacccaagggatgaaacaggtactgaggtgatcaataatgacctgtataatgaa
tag
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