Ictalurus punctatus (channel catfish): 108274525
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Entry
108274525 CDS
T04658
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108274525
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108274525
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108274525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
108274525
NCBI-ProteinID:
XP_017340222
Ensembl:
ENSIPUG00000014505
UniProt:
A0A2D0SBW6
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Position
14:complement(19716166..19769140)
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AA seq
741 aa
AA seq
DB search
MGCNLCSLQKREEHYKLLYEISQVNGKDLSRASHEEAVQAFRTAKDPIVVQVLRRQPLPL
GQGSSQDVQLVDVCTQTDITFEHIMAIAKLRPSSPPVPDICPFLLSDSCHSLHTMGQEYY
EGSEYLSNMPAEAERTDELEYEEVELCRLNSQEKLGLTLCYRTDDEDDVAIYVSEIGPNS
IAARDGRIREGDRILQINGQDVQNREEAVALLSCEDTRNIVLLVARPEVQLEEAWLDDEH
TEFLEELKMEMLEEQRREEEEMERAVREEEEQVWKAEQEDVMGSSACCSSSQERSCAAGS
MHHGADSSEQSVLAQLQKRLSQCLRQRRESQDSPKEEDGRSEGECYQQLLQLKCQIRNSG
EYDLFYSRSSTIECSLTEQGGSSGMERELRLLNEELRSIELECQSIMQAQQLRKRELQQD
RSAKEQGTQSPHRGKLAHISERPEKSDKDSSSAYNTAESSRSTPLLMDRSPEHSVQRLVS
LTNQKNLRSTMIVGRGSALCPPVRRAPSGSPDHSNPSESEQTPPAEEESLPRKARTLRSR
IPYLSSRHQQADIPAHATHYQSYMQLIQQSSAVEYAQCQLSLPAQPSEPKLEWKVKVRSD
GTRYITKRPVRDRLLRERALKIKEERSGGMTTDDDTMSEMKMGRYWSKEERKQQLLRAKE
QRRRREFMQRCRLDSLKECPQSSGEGRKELSIIELSQRKMMKKRNKKILDNWMTIQELMT
HGAKAPEGAKVHNAFLSVTTV
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgctcgctgcagaagagagaggagcattacaaactgctttatgaa
atttcacaggtaaatgggaaggacttatcgagagctagccatgaggaggcagtgcaggcc
ttccgcactgccaaagaccccattgtggtccaggtgctccgacggcaaccgctgcctctg
ggtcaagggtcctctcaggatgtccagctggtggatgtatgcacacagacagacatcacc
ttcgagcatatcatggctatcgccaaactccgacctagcagccctcctgtgccagacatt
tgccctttcctgctctcagacagctgtcactccctccacaccatgggccaggagtactac
gaggggagtgagtatctttccaacatgccagctgaggctgagaggactgatgagttagag
tatgaggaggtagagctatgccgcctgaacagtcaggagaagctcggcctcactctctgc
tacaggacagacgatgaggatgacgttgccatctatgtgtcagagattggacctaatagc
atcgcagcccgggatggtcgtatccgggaaggggaccgtatcttgcagataaatggtcag
gatgtgcagaacagagaggaagcagtggctctgctctcttgtgaggacactagaaatatt
gtattgcttgtagccagaccagaggtgcagttggaggaggcctggttggatgatgagcac
actgagtttttagaagaactcaaaatggaaatgctggaagaacaaagaagagaagaggaa
gagatggaaagagcagtcagagaagaggaagagcaggtctggaaagcagagcaggaggat
gtgatgggcagcagtgcttgctgctcctccagccaggaaaggagttgtgctgccggatcc
atgcaccatggggctgatagctctgagcaaagtgttctggcccagctccagaagagactg
tcccagtgtctgaggcagcgacgggagagccaagactcaccaaaggaagaagatggacgt
tctgaaggtgaatgttaccagcagctgctgcaactaaagtgccaaatccgtaacagtggt
gagtacgacctgttctatagccgcagcagcaccattgagtgcagcctgactgaacagggt
gggagcagcggcatggagcgcgagctgcgtctcctcaatgaagaactgcgcagcattgag
ctggagtgccagagcatcatgcaggcacagcaactccgaaaaagggaactgcagcaggac
aggtctgccaaagagcaagggacgcagagtcctcaccgaggcaagctggcccacatcagt
gaacgtccggagaagtcagacaaggacagctcgagtgcttataacacagcagagagctca
cgcagcacaccactactcatggaccgttcaccagaacattctgtgcagagactagtaagc
ctgaccaatcagaaaaacctaaggagtactatgattgtggggcgcggttctgccctctgt
cctccagtaagaagggctccgagtggcagccctgaccacagcaacccctctgaatcagag
cagacacccccagcagaggaagagagcttaccaagaaaagcgagaacgttaagatcacgc
atcccctacctctcctccaggcaccagcaagcagacatccctgcccatgccacacactac
cagagctacatgcagctgattcagcagagctcagctgtagaatatgcacaatgtcagctc
agtcttcctgcacagccctctgagccaaaactcgagtggaaggtaaaggtgcgcagtgat
ggcacacgctatatcactaagcgcccagtgcgggaccggctgctgcgtgagcgagcactt
aagatcaaagaggaacgcagtggtggtatgaccacggacgatgacaccatgagtgagatg
aagatgggccgctactggagcaaggaagagcgcaagcagcagttgctgagggccaaggaa
cagcggcgacggcgtgagttcatgcagcgctgccggctcgatagtctgaaagagtgcccg
cagagcagcggcgagggccgaaaagagctcagcatcatcgaactcagccaacgcaagatg
atgaagaagcgcaacaagaagatcctggacaactggatgaccattcaggagctgatgacg
catggagcgaaagcacccgaaggggccaaagttcacaatgccttcctttcagttacaact
gtatag
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