Ictalurus punctatus (channel catfish): 108274529
Help
Entry
108274529 CDS
T04658
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108274529
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
108274529
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108274529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
108274529
NCBI-ProteinID:
XP_017340230
UniProt:
A0A2D0SDA0
LinkDB
All DBs
Position
14:18381821..18402512
Genome browser
AA seq
1242 aa
AA seq
DB search
MEVGEMLELAIIKVEDPGCIWGRTVKGPGVHAKSPQDYENLQVKMNLFYNKVNLDLQKLK
PSSLEKGQMCVVFWPELRSWCRAKVESLILGSAWSQAACFLVDHGERVVVSTDGVMALLD
KFLQLPFRVLRFKLARIYPMKLKVHLCNESAELVPSPHWDSSATKYLHNLVQASTLVEAV
LCETHDDCTVIDLYLTIRNVKICVNDDLVVKKFACCKSEKSLGYQSGCVDRSPVCLAWDI
YSSPQHILKMNGCCTVRSAPSHFLTRKSEKDDFMPHHVKSVMTTVKSAFPSGAVSAESDG
QEKCGVHDKDAVPMSTEEGKLKPGDFEESYRENTEHALAEQLSEKLNLFRFMKFLNPFPN
SNLSTKHDINEDDQKTSRISDETAEVQNDLGSTSVISTVQKEPALTQETISTKDKFACSR
LLQLLNPDPINPHSESLDDNVTCCKPSKSAVLVHSATAINPCSCLAQAPITEQFRRFLLR
RKYTGPGLAESYCWPSVARGCDTVLICHRGEDPLSYIPPLLAQLQLASLFSALTAQTGPI
AVIVCPGWEKVESVLELLEESQAAVNLNPAAVLIGVGKNEAKQTKIQNNCQLLVTTPFGL
ARLLEVQFFYFQRLCHLILDDAHELFSRAPEQMTAILQHYQKVVSREDRPMCVRQLVAVG
SRWCRELEPVVRNHMINPCIIFTVPEEAALYGGVQQTILMSLDCNKISVILSFLDFSPSV
AQKTLLITNTAEEVEHVYKALSNTEAFSLKVHEGLTYQFDVVIEQWRKDVGPGTQVILVT
TNDCLKALGIRDATCVVHYGFPSSPKLFGTRMFCMVENFRNLSCKNHFEGSSPAVRSLLL
LSEQNSRHVSGVLRYLKRTDMPLPPELLQFALGFQQAKEQQKADRALCSYLKSMGFCRDR
TSCPDRHTINKILDCPQHADSGTILVLPLYIKTASVYYGRILDQKENGYEKLAAEMKSHY
AKERLCATHVVEGGFYALQEDDVYHRVCLTKVPEKGGQLFSSVTARFVDEGRIQEVKSHQ
LLQLPPEFQSLPDQAVEIILCMARPIDGEMDWNPKVTRAISQKIKGKIHQANVVMCLGNT
VWVDLMVRMTRMPGLQFFINEYNVHAEILATGMGTANPQHLELLKLLCQGEEASAVVALR
ESNGCESEVASLEQRGQAAEEALASQVKAGINMPECTDSEPCEPLQNLPNTNQSTEPNKG
RSKVSLEAWLDAEHMFTSADLRFLPQDGTPALSNSSDEGKSV
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggaggttggagaaatgttagaattggcaataatcaaggttgaggatccaggatgtatt
tgggggcgaactgtgaaaggacctggtgtgcatgccaagagtcctcaagactacgagaac
ctgcaggttaaaatgaatctcttctataacaaggtcaacttggatctgcagaaattaaag
ccatcatcattggagaagggacagatgtgtgtagtgttttggccagagctaaggagctgg
tgtagggccaaagtggagtctctgatcctgggatcagcatggagtcaggccgcgtgcttc
ttagtagaccatggcgagcgtgtcgtcgtcagcacagatggtgtgatggctctgcttgat
aagttcctgcaactgcccttccgggtgctaaggttcaaattggcacggatttacccgatg
aaactcaaggtgcacctctgcaacgagtcagcggagcttgttccatcccctcactgggac
agctctgctacaaaatacctacacaatcttgtacaagcatctacattggttgaggctgtt
ctttgtgaaacacatgatgattgcacagttattgatctgtacttgaccatcagaaatgtg
aagatctgtgtaaatgatgatttggtggtgaaaaagtttgcatgttgcaaaagtgagaag
tctctggggtatcagagcgggtgtgtcgatcgctcccctgtctgcctggcctgggacatt
tacagcagtcctcaacatattctcaaaatgaatggatgctgtacagtgaggtctgctcct
tcacacttcctaaccaggaagagtgagaaagatgatttcatgccacaccacgtgaaatct
gtcatgactacagtgaaatcggcttttcccagtggagcagtatctgctgagtctgatgga
caagagaaatgtggagtacatgacaaagatgcagtccccatgagcactgaggaagggaaa
ttaaagcctggggactttgaagaatcgtatagagagaacacagagcatgcccttgcagag
cagttgtctgaaaaactaaacctgtttagattcatgaagtttttgaaccccttcccaaat
tcgaacttgagtaccaaacatgatattaatgaagacgatcaaaagacttcaagaatttct
gatgaaacagcagaggtgcagaatgacctcggtagtacaagtgtcatctctacagtgcag
aaggaaccagctctcactcaagagacaataagtaccaaagacaaatttgcctgttccaga
ttgctacagttgctgaacccagatccaataaatccacactcggaatctcttgatgataac
gttacatgctgtaaacccagcaagagtgcagttttggtgcactcagctaccgctatcaac
ccctgtagctgtctagcccaggctcccatcaccgagcagtttcgaagattcctgttgagg
agaaagtatacaggaccaggcctggccgagagttactgctggccctctgtggcacgaggt
tgtgacacagtgctgatatgccacaggggagaagatcctctctcctacatcccacctctg
ctggctcagctgcagttagcctctttgttcagtgccctcactgcacaaactgggcccata
gcagtgattgtttgtccaggttgggaaaaggtagagtcagtgctggagctattagaggag
agccaggcagcagtgaatcttaatcctgctgctgtgctgatcggagtaggcaagaatgag
gccaaacaaaccaaaattcagaacaactgtcagttgctggttactaccccctttggcctg
gccaggttgctggaggtgcagttcttctactttcaaaggctctgccacctgattctggat
gatgctcatgagctcttttcaagagcccctgaacagatgactgccatcttgcaacattac
cagaaagtggtgtccagagaggatagacccatgtgtgtgcggcaacttgttgctgtaggc
agtcgttggtgtcgggagctggagcctgtggtccggaatcatatgattaacccctgcatc
attttcacagtgccggaagaggcggcgttatacggtggggttcaacagacaatactgatg
tctctggactgcaataagatctcagtgatactcagctttttggacttcagcccctctgtc
gcccagaaaacccttctcatcactaacactgcagaggaagtggagcatgtgtacaaggct
ctcagcaacacagaagcattctctctcaaagttcacgagggccttacctaccaatttgat
gttgtgattgagcagtggaggaaagacgttggtccaggcacacaggttatcttggtgact
accaatgattgcttaaaggcccttggtatcagggatgccacatgtgtggtacattatggt
ttccctagctcccctaaactgtttgggacccggatgttctgcatggttgaaaactttcgg
aatctctcctgtaagaatcacttcgagggctcctctcctgcggtgcgttctttgttgctg
ctgtctgagcagaattctcgtcacgtgtctggtgtgctgcgctacctgaagcgtacagac
atgccactgccaccagagctcctacagtttgccctgggattccagcaggctaaggaacag
cagaaagctgaccgtgcactctgcagctatctgaagagcatgggcttctgcagggacagg
acaagttgcccagacagacacacaatcaacaaaattcttgattgtccccaacatgcagac
tctgggactattttggtgttgcccctttacattaagaccgcgagcgtgtactatggacgt
attctggaccagaaagagaacggttatgagaaacttgctgctgagatgaagtcgcattat
gctaaagagaggctttgtgcaacgcatgtggtggagggtggcttttatgcactacaggaa
gatgatgtatatcatagggtgtgtctgaccaaggtgccagaaaagggaggccagctgttt
agcagtgtcacagctcgatttgttgatgaaggacgtatacaggaagtgaagtcacatcag
ctactgcagcttcccccggagttccagagcttgccggatcaggctgttgaaatcattctg
tgcatggcccgacccattgatggagagatggactggaacccaaaggttaccagagctatc
agtcagaaaatcaaaggaaaaatacatcaagccaacgtggtgatgtgcctgggcaatact
gtatgggttgatctgatggtacgtatgacacgcatgccaggtctgcagtttttcataaat
gagtataatgtccatgcagagattctggccactgggatgggcaccgcaaaccctcagcat
ctggagctactgaagttgctctgccagggagaggaggcctctgctgttgtggcgctccgt
gagagtaatggatgtgagagtgaggtggcgtctctggaacagaggggtcaggctgctgag
gaagctctggccagtcaggtgaaggctggaatcaacatgcctgagtgtacagacagtgaa
ccctgtgaacccttacagaaccttccaaatacaaaccagagcaccgaacctaataaagga
cgaagtaaggtctctttggaagcctggctagatgctgaacacatgtttacatctgctgat
ctaagatttttacctcaggatgggactcctgctctttctaacagctcagacgaaggcaag
tcggtttaa
DBGET
integrated database retrieval system
