Ictalurus punctatus (channel catfish): 108274662
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Entry
108274662 CDS
T04658
Symbol
lingo4a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4a isoform X2
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108274662 (lingo4a)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
108274662 (lingo4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
Ig_2
ig
LRR_LRWD1
V-set
LRR_EndoS
Sp38
Motif
Other DBs
NCBI-GeneID:
108274662
NCBI-ProteinID:
XP_017340379
Ensembl:
ENSIPUG00000007143
LinkDB
All DBs
Position
14:complement(23992149..24000620)
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AA seq
614 aa
AA seq
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MFGEAADWWKVYWWVAQLCIVGVSVEGTPPWPCPHNCECLHEPLKVNCSSCHLNSVPEGI
HKNTQSLSLANNLLKTLGKHQFSDLKQLQELDLSENMLTVIEVQAFSGLQNLLILRISQN
RLKIILVGVFSGLQRLRLLDISKNEILVFLNDMFYEMPSLQKLEVNDNDLVFISNRAFSG
LLYLQELNLDGYNLTSFPIEALSQLPRLVRLRFCHTGLTVLPNNSFRHLTQLRELTVSHW
HRLDTLLPNSLTGLNLTSLTLSYCNMSSVPYDSLRHLVYLIYLDLSYNPIASIQPHLLRD
LLRLQEFHLVGGNLQRVEPGAFSGLVHVQLFNVSLNQLSTLEETVFQSTGTLQVLRLDGN
PLACDCRLFWVLQRHMHIKVNEQPPSCSSPVQVHGRTFQEFTDSELPVLFICRPARILNH
KPQEVHVDEGQTVLFLCQVDGDPSPSVIWVSPQRAVLPTTGRIRVLSNGTLEVRYVQVQD
SGIYYCFASNVAGNDSISVSLWVRSFVTSPSHNHSAHFFLDGWSFTSAHPPVNGSYNSHP
FPFDLKTLLVAVTMGFLSFLSSVAACFIFMFFWSQSKGQIKHTATIDFVPHSTGAGSGGG
RTRMETGRFNMKLI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtttggggaagctgctgattggtggaaggtgtattggtgggtggcacaactgtgcata
gtaggagtatcggtagaaggaaccccaccttggccatgccctcacaattgtgagtgctta
catgagcctctcaaggtcaactgctcctcatgtcacttaaattctgtaccggaaggtatc
cataaaaacacacaaagcctcagtctggccaataatctcctgaagacacttggaaaacat
cagttctctgacctgaaacagcttcaggaactggatttgagtgaaaacatgctgacagtg
attgaagtgcaagcattctctggcctgcaaaaccttctcattctgaggatttcccaaaat
cgtcttaagatcattttggttggagtgttctctggtcttcagcgtctccgtctgctggac
attagcaagaatgaaatccttgtctttctcaatgacatgttttatgagatgccatcacta
cagaagttggaagtgaatgacaatgatcttgtattcatctcaaaccgtgccttcagtggc
ctactatatcttcaggaacttaacctggatggctataaccttacctcattcccaatcgag
gcactgtcacagcttcccaggctggtgcggctgcgtttctgtcacactggtctcacagtg
ctacccaacaattcatttaggcatctgactcagctcagggagctgacagtgtcccactgg
cacaggctggatacacttttacctaatagcttgactggacttaacctcacctctctgaca
ctcagctactgcaacatgagctctgtgccatatgattctttgcgccatctggtctatctg
atctacttggacctgtcctataaccctattgcctccatccagccacatctgctcagagac
cttctacggctgcaagagttccatttggttggtgggaatttgcagagggtagaaccaggt
gctttcagtggccttgttcatgttcagctattcaatgtatctttaaatcaactgtcaaca
ctagaagagactgtgtttcaatcaacagggacacttcaggtacttcggctggatgggaac
ccacttgcttgtgactgcagactattttgggttctgcaacgtcatatgcatataaaggtt
aatgagcagccacccagctgttcatcacctgtacaggtgcatggtagaacattccaagag
ttcactgattctgagcttccagtgttgtttatttgtagaccggcacgtattctaaaccac
aagccacaggaggtgcatgtggacgagggccaaacagtcctgttcctttgccaagtggat
ggagacccttccccctctgttatctgggttagtcctcagcgggcggttctgcccaccaca
ggtcggatccgtgtgctgtccaatggaacccttgaggtgcgttatgtacaagtacaagac
agtggcatctactactgctttgcatccaatgtggcagggaatgacagtatttctgtcagt
ctgtgggtgagaagttttgtcacgtccccatctcataaccactctgcccacttctttctt
gatgggtggagttttacatctgcccatccaccagtaaatggttcatacaattctcatcca
tttccatttgacttgaagacactgctggttgcagtaacaatgggcttcctgtcattcctg
agctctgtggctgcttgctttatattcatgttcttctggagtcagagcaaagggcaaatc
aaacacacagccacaattgactttgtacctcacagtacaggagcaggatctgggggagga
cggaccagaatggagactggcaggtttaacatgaagctcatctga
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