Ictalurus punctatus (channel catfish): 108274704
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Entry
108274704 CDS
T04658
Name
(RefSeq) deformed epidermal autoregulatory factor 1 homolog isoform X1
KO
K23041
deformed epidermal autoregulatory factor 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108274704
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108274704
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
SAND domain-containing proteins
108274704
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108274704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAND
zf-MYND
DUF2457
MG280
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
108274704
NCBI-ProteinID:
XP_017340467
Ensembl:
ENSIPUG00000009158
UniProt:
A0A2D0SCL5
LinkDB
All DBs
Position
14:complement(22209336..22232926)
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AA seq
542 aa
AA seq
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MDAGEVAAVKRLGFAGAEEEKAVGLEEEEEEEEEEEEEEEEEERSESEPDEAEVSTMPCM
AEAANIAIAESLPNTDDGEAPFAEVTTVTVSDVQNADDNVFSTSVATAASIPEHVLTGRT
TLQISDSLSTQKATLIVVHTDGSIVDATGLKATTAPMTPGPQTPSTPLTPSHEKDVSKYN
WDPSVYENELPVRCRNTSGVLYKNRLGSGGKGRCVKYNNNWYTPTEFEGLAGRASSKDWK
RSIRYAGRPLQCLIQERILNPHAASCTCVACCDDLAVSKDGSFGGDSISMTGPVRLFVPY
KRRKKESERPASPEKKEEPSPKNITLAPGAAFTVTPSGQLTTTGTLTFDRTATGDATTII
SDSPAASDVFSSTAVLTTLPALTVIPQQPILQAKGPAAAAMANGLETSEQRTWLYLEETA
NTLHNTVQQLKALIAQAKQASQASSSLEKSNCSRKDSFPSQLSLTDDTEGKITEIIIKHT
CVNCGREASSECAGCHKVYYCSSFCQKKDWKDHQHSCSQPTVAVGVHDEAHIASMEVEKV
KA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaggcgaagtggcggcggtgaaacggctcgggtttgccggagcggaggaggag
aaggccgtgggactggaggaggaagaagaggaggaggaggaagaggaagaggaggaggag
gaggaggagcgctccgaaagcgagccggatgaagccgaagtgagcacgatgccctgcatg
gcggaagcggccaacatcgccatagccgagtccctgccgaacacagacgacggcgaagcg
ccgtttgcggaggtcacgacggttaccgtcagtgatgtccagaatgcagatgacaacgtt
ttctcaacatccgttgccacggcagcctccatccctgaacatgtgcttacaggtagaacc
actctgcagatcagcgacagtctcagcacgcagaaggcaaccctgattgtcgtgcacacg
gatgggagtatagtagatgccacgggcctgaaagccacaacagcacccatgacgccaggg
cctcagactccctccacacctctgactccgagtcacgagaaagatgtgagcaagtataac
tgggatccgtccgtgtacgaaaacgagctgcccgtgcgctgcaggaacaccagcggtgtc
ctctacaagaacagactaggttcaggtggcaaaggacgttgcgtcaaatacaacaataac
tggtacactccgacggagttcgaagggctggccggaagagccagcagtaaggactggaag
aggagcattcgttatgctgggaggcctttacagtgccttatacaggagcgcatcctcaac
ccccatgctgcctcttgtacatgtgtggcctgctgtgatgatctagctgtgagcaaggac
ggatccttcggaggcgacagcatatctatgaccggacccgtgcgactctttgtcccttac
aagaggcgaaagaaagagagtgagcgcccggcatctccagagaaaaaggaggaaccgtca
cccaagaacattactctagcacctggggccgcattcaccgtgaccccatcaggtcagctc
accactacaggcacactgacctttgatcgaacggcaactggagacgcgacgaccatcatt
tccgacagccctgccgcttcagatgtcttcagcagcacagcagtgctgaccacgctgccg
gcgctgaccgtgatccctcagcagcccatcttacaggctaaaggtcccgctgcagccgca
atggccaacggcttggagacgagcgaacagcgcacctggctgtacctagaggagacggcc
aacacactacacaacactgtccagcagctcaaagcactcatcgcccaggccaaacaggcc
agccaagccagcagcagcctggagaaaagcaactgcagcaggaaggattcttttcccagc
caactgtcgctgactgatgacacagaggggaagattactgaaattatcatcaagcatacc
tgtgtgaactgtgggcgtgaagcttccagcgaatgtgcaggctgccacaaagtctactac
tgctctagcttctgccaaaaaaaggactggaaggatcaccagcacagttgctctcagccc
actgtagctgtgggagttcatgacgaggctcacatagccagcatggaggtagagaaagtc
aaggcatag
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