Ictalurus punctatus (channel catfish): 108274727
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Entry
108274727 CDS
T04658
Symbol
snx1a
Name
(RefSeq) sorting nexin-1a isoform X1
KO
K17917
sorting nexin-1/2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108274727 (snx1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108274727 (snx1a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108274727 (snx1a)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Macropinocytosis
Sorting nexins
108274727 (snx1a)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
108274727 (snx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
Sorting_nexin
BAR_3_WASP_bdg
Pox_Ag35
Phage_T7_Gp13
Motif
Other DBs
NCBI-GeneID:
108274727
NCBI-ProteinID:
XP_017340508
Ensembl:
ENSIPUG00000013546
UniProt:
A0A2D0SCQ9
LinkDB
All DBs
Position
14:4122390..4134231
Genome browser
AA seq
685 aa
AA seq
DB search
MAAGSERSPPPFPDSEDQDPEPELGEDEDSDEGADIFTGAALSCAPADPLVRVSAGEPPK
DVFSLALEDPLKDPSRAKSEPEKAAGGAAGVEVDLFADPLGESGAPPTTDKNADPLKSEK
SSAARREIFGAPQNDVRKSEDIFEEPQEDGTITKMTPGPLGGAAGGKKAPSADLFGDDDD
DGADLFEEPLQVKKPLAKESSKGRADPSKDAAADLFTEKVVGVPAAAKPGPDPGSRTNGL
HSDEDDLFTEATVELSLDSPRNDHRKRQTQKTSAPASSLAASASVSKPQHKTLEEQEEEE
EKEDKFDLNISVTNPEKVGDGMNAYMAYKVSTQTTLPMFRTKQFTVRRRFSDFLGLYEKL
SEKHSQNGHIVPPPPEKSILGMTKVKVGKEDPSSAEFVERRRAALERYVQRLVCHPSLLQ
DPDVREFLEKEELPRAVSTQTLSGAGFLKMINKATDAVSKMTIKMNESDVWFEEKLQEVE
SEDQQLRKLHAMVESLVNHRKELSLSTAVFAKSVAMLGSSEDNTALSRALSQLAEVEDRI
EQLHQDQAANDFFIFAEHLADYIRLLVAVRACFDQRMKAWQRWQDAQNMLQKKRETEAKL
LWANKPDKLQQAKDEITEWESKVSQYERDFERVSATVRKEVLRFEKEQARDFKKQIVRYL
DSLLNSQQQLIKYWEAFLPEAKAIA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggctcggagcgcagtccgcctccctttcccgactcagaggatcaggacccg
gagcctgagttaggcgaggacgaggacagcgatgaaggagcggacattttcaccggcgct
gcgctctcttgtgcaccagcggatcctctcgttcgcgtgagcgccggagagcctcctaaa
gacgtcttcagtctagccctagaagatcctctgaaagacccaagtcgggcgaagtctgaa
ccagagaaggccgctggaggagctgccggtgtggaagtcgacctgttcgccgatccttta
ggcgagtccggagctccgccgaccactgacaaaaacgcagaccctctgaagagcgagaag
agttcagcggcacggcgcgagatctttggcgcacctcagaacgacgtcaggaagtccgag
gacatttttgaagagccgcaggaagacggtacgattactaaaatgacacccggacctcta
ggtggcgctgcaggtgggaagaaagcacccagcgccgacctgtttggagatgacgatgac
gacggtgccgatctgttcgaggagcctctgcaggtgaagaaacctctggcgaaggaaagc
agtaaagggcgtgctgacccgtcgaaagacgccgctgctgacctctttaccgagaaggtc
gtcggagtccctgctgcggctaaaccgggcccggaccccggctccagaaccaacgggctg
cactcagacgaggacgatctgtttacagaggccaccgttgagctgtctctggacagtcct
cgtaatgaccaccggaagagacaaacacagaagacctcagcaccggcttcctctctcgcg
gcttcagcgagcgtctccaaacctcagcataaaacactagaggagcaggaggaggaagag
gagaaggaggacaaatttgatttgaacatttcagttacaaacccagagaaagtgggtgat
ggtatgaatgcctacatggcctacaaagtctccacacagacgacgttgcccatgttccgc
actaagcagttcacagtgcgcaggcgcttcagcgattttctgggtctctacgagaaactc
tcagaaaaacattcacagaatggacacattgtgcctccgccaccagagaagagcattctg
ggaatgaccaaagtgaaggtgggaaaggaagacccgtcatcagccgagtttgtcgaaagg
aggagagctgctcttgaaaggtacgtccagagactcgtgtgtcatccgtctctgctgcaa
gaccccgatgtgagagagtttttagagaaagaggagttacccagggcagttagtacccag
acgctgagtggagccggattcctcaagatgatcaacaaggccactgacgcagtcagcaag
atgaccatcaagatgaacgagtcagacgtttggtttgaagagaagctgcaggaggtagag
agtgaggaccaacagctgaggaagcttcacgctatggtggagtccctcgttaaccacagg
aaagagttgtctctgagcacagcagtgtttgctaagagcgtggcaatgttgggtagttcg
gaggataacaccgcgctctcacgagccctgtcccagctagccgaggtggaggaccgcatc
gagcagcttcatcaggaccaggctgctaatgacttcttcatctttgccgagcatcttgca
gactacatccgcttgctggttgcagtcagggcatgctttgaccagcggatgaaggcgtgg
cagcgctggcaagacgctcagaacatgctacagaagaagcgagagactgaggccaagctg
ctatgggccaacaaacctgacaaacttcagcaagccaaggacgagatcacagagtgggag
tctaaggtcagtcagtacgagagagacttcgagagagtatccgccaccgtacgaaaggaa
gtcctccggttcgagaaagagcaggctcgggatttcaagaaacaaatcgtcaggtatctg
gattctctgttgaattcacagcaacagctgatcaagtactgggaggcgttcttgccagag
gcaaaagcaattgcatga
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