Ictalurus punctatus (channel catfish): 108274883
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Entry
108274883 CDS
T04658
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108274883
Membrane trafficking [BR:
ipu04131
]
Protein recycling
Others
EARP complex
108274883
Endosome - Golgi transport
Tethering complex
GARP complex
108274883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
COG6_N
CoV_NSP7
DUF5740
SHE3
CENP-F_leu_zip
DUF1664
DUF4795
Motif
Other DBs
NCBI-GeneID:
108274883
NCBI-ProteinID:
XP_053541804
Ensembl:
ENSIPUG00000004580
UniProt:
A0A9F7TQU2
LinkDB
All DBs
Position
14:26958272..26968283
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AA seq
724 aa
AA seq
DB search
MADDVVSTEAPSEGNTAVGSTTSAMDYLQDEKSDADVVAPLNLGDLDLSSDEFILDEVDI
HIQANLEDELVQEALRTGVDLRQYSKQVEAELQRIEQASIKDYIKESENIASLHNQITAC
DSILERMEGMLSSFQADLSSISSEIETLQQQSVSMSVRLKNRQAVRSHLSQLVDELLVPG
TMISVILESPVTEQQFLEQLHELNNKINFAKELSFRETLACADIQDIVDRLKIKAVSKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSSRLLKVQYEDVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQREAVLTQAEL
EGPILIPHAVQRADSRYPYETLFRSQHYALLDNACREFLFLSDFFMVTGNSALDLFNCVM
GKTLSMFLKNIATYVSDCYDSIAVFLCIHIILRFKNITAKRNIPALDKYWEAVLEMLWPR
FELILEMNIQSIRDTDPQKLGVLDTRPHYITRRYAEFSSGIVSINQTFPNERTNVLLGQL
QIEVENFVLKMAAEFPSRRDQLIFLINNYDMMLGVLMERAADDSKEVEGFQQLLLARTQE
FIEEILAPPFGGMITFVKESEALMEKGQLDKLKNDEVRITQLVRGFSSTWKQSVESLSQE
VMRSFTNFKNGTSIIQGALTQLIQYYHGFHKILSQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgatgttgtcagcactgaggctccttctgaaggaaacacagctgtcggctcc
accaccagcgccatggattatttacaggacgagaagtctgacgctgacgtcgtggccccg
ctgaacctgggggatctggacctgtcctcggacgagttcattctggacgaggtggacatc
cacattcaggccaatctggaggacgagctggtgcaggaagctctcaggacgggtgtggat
ctgcgtcagtactctaagcaggtggaggcggagctacagcgcattgaacaggcctcgatc
aaagactacattaaggagagtgagaacatcgcatcactgcacaaccagatcaccgcctgc
gactccatactggagaggatggagggcatgctgagcagtttccaggcggacctgtcgtcc
atcagcagtgagattgagacgctgcagcagcagtcggtcagtatgagcgtgaggctgaag
aacagacaggctgtacgcagtcacctcagccaactggtggacgagctgctcgtacccggc
accatgatcagtgtgattctggagagccctgtgacggagcagcagttcctcgagcagctt
catgaactcaacaataagattaactttgccaaggagctgagtttcagagagacgctcgcc
tgtgcggacattcaggacatcgtagatcgcctcaagatcaaggcggtcagcaagatccgt
gagttcatcctgcagaagatctactcgttcaggaagcccatgaccaactatcaaattcct
cagaacacactccttaagtataggttcttctaccagttcctgttggccaatgagaggacg
gtagcgaaagaaatccgggacgagtacgtggacaccatgagcaagatctactacagctac
ttcaaatcctacagcagccgtctgctcaaagtacagtatgaagatgtagcagataaagat
gatctgatgggcgtggaagatacggccaagaaaggtttcttctccaaaccgtctctgaag
agcaggaacaccatcttcactctgggtcagagggaggcggtgctgacccaggccgagctc
gaggggcccatcctgatcccacatgccgttcagcgtgccgactccaggtacccgtacgag
acgctgttccgcagtcagcactacgctctgttggataacgcctgccgtgagttcctcttc
ctatctgattttttcatggtgacgggaaattcagccctggatctgttcaactgcgtcatg
ggcaaaacactcagcatgttcctgaagaacatcgctacatatgtgtcagactgctatgac
agcatcgctgtatttctgtgcatccacatcatcctccgcttcaaaaacatcacagccaag
aggaacatccccgccctcgacaagtactgggaggctgtcttggagatgttatggccaagg
tttgagctcattctggagatgaacatccagagcatccgggatacagatcctcaaaaactc
ggagtgctggacaccagaccacactacatcacccggcgctatgcggaattctcctctggt
atagtaagcataaaccagacgttccctaacgagagaaccaacgtccttctgggacaacta
cagatcgaggtggagaactttgtgttaaagatggctgctgaatttccctccagacgcgat
cagctcatcttcctcatcaacaactatgacatgatgctaggggttcttatggagagagca
gctgatgacagtaaagaggtggaaggatttcagcagctcctcctggccaggacgcaggag
ttcattgaggagatcctggcaccgcctttcggtgggatgatcacgtttgtgaaggagagc
gaggcgctgatggagaaagggcagctggacaagctgaagaacgatgaagttcgtatcaca
cagctggtgcgtggtttctccagcacatggaagcagtcagtggagtctctaagtcaggaa
gtcatgcgctccttcaccaactttaaaaatggcaccagcatcatccagggggcgctgact
cagctcatccagtactaccacggcttccacaagatcctgtcccagccgacgttccgcagc
ctggccgtgcgctccgagctcatcaacctgcaccacctcatggtggaggtcaagaaacac
aaaccaaacttttaa
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