Ictalurus punctatus (channel catfish): 108274978 Help Entry 108274978         CDS       T04658                                  Name (RefSeq) RNA-splicing ligase RtcB homolog   KO K14415   tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] Organism ipu  Ictalurus punctatus (channel catfish) Brite KEGG Orthology (KO) [BR:ipu00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:ipu03016]     108274978 Enzymes [BR:ipu01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase      108274978 Transfer RNA biogenesis [BR:ipu03016]  Eukaryotic type   tRNA spricing factors    tRNA splicing ligase complex     108274978  Prokaryotic type    tRNA splicing ligases     108274978 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RtcB Cu-oxidase_4 Motif Other DBs NCBI-GeneID:  108274978 NCBI-ProteinID:  XP_017340950 Ensembl:  ENSIPUG00000015443 UniProt:  A0A2D0SFC9 LinkDB All DBs Position 14:2338563..2344357 Genome browser AA seq 505 aa AA seqDB search MSRSYNDELQFLDKIDKTCWRIKKGFVPNMKVEGVFYVNESLEKLMFEELRNACRGGGLG GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPTAVVSPGGVGFDI NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMNAKDLEEALEMGMDWSL REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNIVVNDRQLACACIGS PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE HMVDGKQKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD VVNTCHDAGISKKAIKLRPIAVIKG NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgagtcgctcttataacgacgaattgcagtttttggataagatcgacaagacatgttgg cgaatcaagaaggggttcgtcccaaacatgaaggtggagggtgtcttctatgtcaacgag tcgctggagaagctgatgttcgaagagctgcgaaacgcatgtcgtggaggaggtcttggc ggatttctgcccgctatgaagcagatcgggaatgtggcggctctgccgggaatcgtgcat agatctataggcctgcctgacgttcactccggatacggttttgcgatcgggaacatggct gctttcgacatgagcgacccgacggcggttgtctcaccaggtggtgtagggtttgacatt aattgtggtgtgcgcctgctgagaaccaacctggatgaaggagacgtgcagccggtgaag gaacagctggctcaggctctctttgaccacatccctgtaggagtcgggtccaagggagtc attcccatgaatgccaaagatttggaggaggccctggagatggggatggactggtctctg cgcgagggctacgcctgggctgaagataaagagcactgcgaagagtacggcaggatgctg caggccgacccgaacaaggtttcctccaaggccaaaaagagaggactgccgcagcttggg acgctgggagcagggaatcactacgccgagatccaggtggtggacgagatctacaatgac tacgcagccaaaaagatgggcatcgaccacaagggtcaggtgtgcgtgatgatccacagc gggagtcgtgggctgggacatcaggtggccacagatgctttggtagccatggagaaggcg atgaagcgtgacaacatcgtggtaaacgatcggcaactcgcttgtgcctgcatcggttct cctgaaggtcaggactacctgaagggcatggcggctgcaggcaactacgcctgggtcaac cgctcctccatgaccttccttacacgccaggccttctccaaagtgtttaacaccacacct gatgatctggatatgcatgtgatctatgacgtgtcccataacattgctaaagtggaggag cacatggtggacggcaagcagaaaaccctgctggtgcatcgtaagggctcaacacgggct ttcccccctcatcaccctctcatcgcagtcgactaccagctgactggtcagcctgtgttg attggtggcacgatgggcacctgcagctacgtgttgactggcactgagaagggcatgact gaaacttttggcaccacctgccatggcgcaggtcgggcactgtcccgagctaaatcccgc aggaatctggactttcaggacgttttggacaaactggctgatatgggcatcgccatcaga gtggcttcaccaaaactggtcatggaggaggccccagaatcctacaagaatgtaacagat gtggtgaacacgtgccatgacgccggcatcagcaagaaagccatcaagcttcgacccatc gctgtgattaagggttaa

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