Ictalurus punctatus (channel catfish): 108275048
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Entry
108275048 CDS
T04658
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108275048
03015 mRNA surveillance pathway
108275048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108275048
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108275048
mRNA cycle factors
P-body specific factors
108275048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
MAP7
Motif
Other DBs
NCBI-GeneID:
108275048
NCBI-ProteinID:
XP_017341091
Ensembl:
ENSIPUG00000015524
UniProt:
A0A2D0SF43
LinkDB
All DBs
Position
14:2300015..2316565
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AA seq
1279 aa
AA seq
DB search
MPAERKKSVNSDEKETGSFSNKDREKDRDGDRRPTFSRDKGRDESKMSGKKEGGKSAEEK
KRRIEEEKRRREEKERKKREEEKQKAEEEQKRKEEEERKQKEEQEKKQLEEEAKRQKEEE
AAQLKEKEEAQQLHQEAWERHQTRKELRVKNQHAQESRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRSSLSHDFDSLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYADFA
PQLLAAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKTIIGA
DRETHTHVSVVISFCKHCGDDIAGLVPRRVKSAAEKFGLVFPPSEIINGEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATCYQKLLANTQSLA
DLLDENMPELPQDKSVQEEHGPGIDIFTPGKPGDYELDGGIWEDEDARNFYENLVDLKAF
VPAILFKDNEKASQSKDKDESKEAKEGRDGKDSSCTDELELELEALDIADDPLELEAADE
AENEELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNT
KSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQ
INIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRS
PESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRK
LLYKDLSKVTTEKVLRQMRKLPWHEADLKSYLICCMVNIWNVKYNSIHCVANLLAGLVAY
QEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRVSSAKFLGELYNYRMVESAVIFRTLFSFI
SFGVNPDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKK
SLEVWTKDHQFPIDIDYMISDMLDLLRPKMHLCCSLEEACQQVAELEREVLSKLGFTIEK
DGSCSRTVGEVEALDEEDEEDEDERGAETEEQSGNESEMNEPEEEEGSENEEEERDEEEE
NTDYLTDSNKENETDEENNEVMIRGGGLKHVACAEDDDFIQALDKMMLENLQQRSGEAVK
VHQLDVAIPLQLKSQLKKGSTPSCSGDAEADNDTMQFVMLTRKGNKQQFKILNVPLSSHL
AANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQH
PKGAPNADLIFKTGGRSCR
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgaacgcaagaagtcagtaaactcggacgagaaagagacgggctccttcagt
aacaaggaccgggagaaagaccgagacggcgacagaaggccgacgttctcccgagacaag
ggccgagatgagagcaaaatgagcggaaagaaagagggcggcaagtcggccgaggagaag
aagcggaggatcgaggaggagaagcggcggcgagaagagaaggagcggaaaaagcgggag
gaggagaagcagaaggctgaagaggagcagaagaggaaggaagaagaagagcgaaagcag
aaggaggaacaggaaaagaagcagctggaggaggaagcgaaacggcagaaggaagaggag
gcggctcagctaaaggagaaggaagaagctcagcagctgcaccaggaggcctgggagaga
caccaaaccagaaaggagctgcgtgtgaagaatcagcacgcgcaagagagccgccctgaa
gaagcctttttcagccgcctggattccagcctgaagaagaacacggccttcgttaagaag
ctccgcaccctcacggagcagcagcgcagttcgctctcgcacgacttcgactcgctcaat
ctcagcaagtacatcggcgaggcggtcagctcgctggtggaagccaagctgaagatctcg
gatgtgggctgcgccgtgcacctgtgctcgcttttccaccagcgctacgccgactttgcg
ccgcagctgctggctgcctggaagaggcacttcgaggcgcgcaaggaggagaaagctccg
aacgtcagcaagctgcgcacggacctgcgcttcatagctgaactcaccatcgtgggcctg
ttcaccgataaggaagggctctctctgatctacgagcagctgaaaaccatcatcggggcc
gaccgtgaaacccacacccacgtctccgtggtgatcagcttctgcaagcactgcggcgac
gacatcgccgggctggtgcctcgccgcgtgaagagcgcggcggagaagttcggcctggtc
ttccctcccagcgagatcatcaacggcgagaagcagcagcccttccagaacctgctcagg
gagtatttcacgtctctcaccaagcacctgaagaaagatcaccgcgagctgcagaacatc
gaacgacaaaacaggcgtatccttcactcgaaaggagagctgagcgaggatcgacataag
cagtacgaggagtttgcgacgtgctaccagaagctgctggctaacactcagtctctggca
gatctgctggatgagaacatgcctgagctgcctcaggataaatccgtccaagaagaacac
ggcccggggatcgacatcttcactccagggaagccaggagactacgagctggacggaggg
atctgggaggacgaggatgcgcggaacttttacgagaacctggtggacctgaaggctttc
gtccccgccatcctgttcaaggacaacgaaaaggccagccagagcaaagacaaggacgag
agcaaagaagcgaaagagggccgcgatgggaaagactcgagctgcacggacgagctggag
ctggagctcgaggctctggatatcgcagacgaccctctggagctcgaagccgccgacgag
gccgagaacgaagagctggccaagaaactcctcgacgagcaagaacaagaggacgaggaa
gccagcaccgggtctcatctcaaactcatcgtcgacgcgttcatccagcagcttcccaac
tgcgtcaacagagacctgatcgacaaggctgccatggacttctgtatgaacatgaacacc
aagtccaaccgcaggaagctcgtgcgcgcgctcttcaccgtccccaggcagaggctggac
ctcttgcctttctattcgcggctggtggcgacgctgcacccgtgcatgtctgacgtcgcg
gaggatctctgctccatgctcaaaggagacttccgtttccacgtaagaaagaaggaccaa
atcaacatcgagaccaagaataagacggtgaggtttataggcgagttggccaagttcaaa
atgttttccaaaacggacacgctgcactgcctgaagatgctgctgtcggatttctcccat
caccacatcgaaatggcctgcactttactggagacgtgcggacgcttcctcttcaggtcg
cccgagtcgcacttgcgtaccagcgtcctactggagcaaatgatgcggaagaagcaggcc
cagcacctggacgctcgctacgtgacgatggtcgagaacgcctactactactgcaacccg
cctcccatggagaaaaccgtgcgcaagaagaggcctcctctgcaggagtacatccgcaaa
ctgctctacaaagacctgtccaaggttaccacggagaaggttttaaggcagatgcgcaaa
ttgccgtggcacgaagccgatttgaagagctacctgatctgctgcatggtgaacatctgg
aacgtgaagtacaacagtatccactgcgtggcgaacctgctggccggactggtggcgtat
caggaagacgtcggtatacacgtagtggatggcgtactggaggatatacgccttggcatg
gaggtgaaccagccgaagttcaaccagcggcgcgtcagcagcgcaaagttcctgggcgag
ctgtacaactaccgcatggtggagtcggccgtgatcttccgcacgctcttctctttcatc
tcgttcggcgtgaatccggacggctcgcccagtcctctggatcctcccgagcacctgttt
cgcatccgcttggtgtgcacgctgctcgacacctgcggccagtacttcgaccgcggctcc
agcaagaagaagctcgactgcttcctcatctacttccagaggtatatctggtggaaaaag
agtttggaggtgtggactaaagatcaccagtttcccatcgatatcgactacatgatcagc
gacatgttggatttgctgcgacccaaaatgcacctgtgctgctctctggaggaagcctgc
caacaggtcgctgaacttgagagagaagtcctcagcaaactgggctttactatagagaag
gacggaagctgttccaggaccgtgggggaagtcgaggctctggacgaggaggacgaggaa
gacgaagacgagcgcggggcagagaccgaagagcagtccggaaacgagagcgagatgaac
gaacccgaggaggaggaaggctcggagaacgaggaagaagagcgtgacgaggaggaagag
aacaccgactacctgaccgactccaataaagagaacgagaccgacgaggaaaacaacgag
gtgatgattcgtggcggagggctgaagcacgtggcctgcgctgaggacgacgacttcatt
caggctctggacaagatgatgttggaaaacctgcagcagcgcagtggcgaggcagtgaaa
gtgcaccaacttgacgtcgctataccgctgcagctgaagagccagttgaagaaaggctcc
accccctcgtgctcgggagacgccgaggccgacaacgacaccatgcagttcgtcatgctg
accaggaaaggcaacaaacagcagtttaagatcctgaacgtgccgctgtcgtcacatctg
gccgctaatcacttcaaccagcagcaggcagagcaggaggagcgcatgcgcatgaagaaa
ctcactctagacatcaatgaaaggcaggaacaggaagactaccaggagatgatgcagtcg
ctggctcagagacccgcccctgctaacacaaaccgagagcgcagaccgcgttaccagcac
cctaaaggagcaccgaacgcagacctgatattcaagactgggggaaggtcatgtaggtag
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