Ictalurus punctatus (channel catfish): 108275198
Help
Entry
108275198 CDS
T04658
Symbol
elp1
Name
(RefSeq) elongator complex protein 1 isoform X1
KO
K11373
elongator complex protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108275198 (elp1)
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
108275198 (elp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
A-sol_ELP1
HB_ELP1
Beta-prop_ELP1_2nd
TPR_ELP1
Beta-prop_EML_2
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
Beta-prop_WDR19_1st
WD40_CDC20-Fz
PQQ_2
CHASE4
Motif
Other DBs
NCBI-GeneID:
108275198
NCBI-ProteinID:
XP_017341322
Ensembl:
ENSIPUG00000007073
UniProt:
A0A2D0SF22
LinkDB
All DBs
Position
14:complement(10541485..10564141)
Genome browser
AA seq
1332 aa
AA seq
DB search
MRNLKLLKCVRMSELQSPGSAQCVSVRIDTDTVLVASQFSITEYDPRTGQVLNEVSLTME
SYLAEDGSGVVVGIQDLPDQESVCVATAQGDVILWSLNTNQLECVGSVDSGLTAMSWSPD
QELVTLCTGQETIILMTKDFEPITEVAIQQDEFGEGKFITVGWGKKETQFHGSEGKQAAQ
RKAAEVQPAVPWDDRMPRITWRGDGQLFAVGAICPRTGARKVRVWNRECVLQATSEVVNG
LEEALCWKPSGSVIACTQRHPNKYCVVFMEKNGLLHGDFTLPFAKDQVKVKELLWNSDST
VLAVWLMDLNPGVSGNRNTYIQLWTVGNYHWYLKQSLHFGSEPSKAPVCVCWDPVKSLHL
HLMAHDWSTYTYDWGWSTDRSQGYDSHDNANVAVIDGAKLMVTAFRQSVVPPPMCSYELQ
FPSPVNLVTFHAQPLSTNELAALTADGCLHIASRDSEDASEPVKDASGFRVVSKPLVLQK
TYSVAVAYEGVLALRLLLWLRKDVFVAVACGNKLNQSHLFVLTPAEIQSSEPRLDIRSEV
KVEGHVISMCHSSKSDTLVLQLEDGQIRRVNWDSAAITVTEWKDSLEFSVNFPQPCVHTA
LCTINGEEHLVGLTERSHLYIGNNVVASNISSFVVYDEFLLLTTHSHICRCFHLTTLSIK
DVQVALSSEAAQNDESVRRVERGSRIVTVVPQDTRLILQMPRGNLETIHHRALVLAQVRK
WLDELKFRDAFECMRKLRINLNLIYDHNPNVFLDNAELFLKQIASVNYINLFLTELKEED
TTKTMYPCPVSSACQTASVTAREGQGRRKVDIVCDALRSAMETLDPHKYCLCILTSHVRK
TKPELETALQKVHELRVNPPSAENAVSAEEALKYLLFLVNVNELYEHSLGTYDFDLVLMV
AEKSQKDPKEYLSFLNMLKTLEPNYQRYTIDKHLKRYKKALHHLSKCGEEHFTELLNLVR
DQKLYTEALQLFPADSQQYKTLSVAFAEHLLEDQQAEQAGLLLWRCAEMPRALQAFISCT
SWRHALAVATHIPVPPTQLTQLARDLAVFFNVSEKLLEMRRHTEAALLLEQYAKDCEEAI
SALIEGAAWEEALRLIYLYHRPDIIETNLKPALLEAHSTQMAFVDSQRALFTRHKNRLAV
VREQKEKARLEFVDDDGQDCADAELYSEASSVLTGSRLGSKYSHSNSRISSRSSKNRRKA
EGKKHSLKEGSPFEDIALLHAIIQIIHVVDKMREEIHSLLKALILFQFDKLARSLQLDYS
MLLRLIDTGIPEIWHEGIQQSQTPITGPNSTANSIMASFQQPRPTTVPLQDAEILTPPKM
RQSVKWKLSILE
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacctaaagctgctgaaatgtgtgcgcatgtcggagctgcagagtccaggctct
gctcagtgtgtttctgtgaggatagacacagacaccgtactggtcgcctctcagttctcc
atcacagagtacgacccccggacaggccaggtattgaatgaagtgtctctaaccatggag
agctatctcgcagaggatggcagcggtgttgttgtgggtattcaggatctgccggatcag
gagtctgtttgtgtggccactgcccagggcgatgtcattctgtggagccttaacactaat
cagctggagtgtgtgggaagtgtggatagtggactcactgccatgagttggagtccagac
caggagctggtgacgctctgcacaggacaggagacaatcatcttaatgaccaaagacttt
gagcctataactgaggtggccattcagcaggatgagtttggagaaggtaaattcatcaca
gtaggatggggtaagaaggagacccagtttcacggctcagaggggaagcaggcggcgcag
aggaaagctgcagaagtgcagcctgcagtgccatgggacgaccgcatgccgaggattaca
tggagaggcgatgggcagctttttgcagttggcgcaatctgtcctcggacaggtgctaga
aaagtcagagtgtggaacagagagtgtgtcctgcaggctactagtgaagttgtcaacggc
cttgaagaagctctctgctggaaaccttcaggtagcgtgatagcctgcacccagcggcac
ccaaacaaatactgtgttgtgtttatggaaaagaatggcctgctgcatggagactttact
ctgcccttcgccaaggaccaggttaaggtgaaggagttgctttggaacagtgactccacg
gtgctggctgtttggctcatggatctgaacccaggagtgagcggcaaccgcaacacatac
attcagctatggacagtagggaattaccactggtacctgaaacagagtctgcattttgga
agtgagccctcaaaggctccagtctgtgtgtgttgggaccctgtgaagtcactccacctc
cacctgatggctcatgactggagcacttacacttatgactggggctggagcacagatcgt
agccaaggatatgattcacatgataatgccaatgtggcagtcattgatggagctaaactt
atggtgacagcatttcgtcagtctgtggttcctccacccatgtgttcctatgaactgcag
tttccttctcctgtcaacttggtcaccttccacgcacagcctctgagtaccaatgagctt
gcagcattaacagcagacggatgtttgcatatcgctagccgagacagtgaagatgccagt
gagcctgttaaagatgcatctggatttagagtcgtctctaaaccactggttttacaaaag
acatacagtgttgcagtggcttacgagggggttctggctctgcgtctgctgctctggctg
aggaaggacgtgttcgtggcagttgcatgtggaaacaaactaaaccagtcacatctattc
gtactgaccccagcagagatccagagttcagaacccagactggacatcaggtcagaggtc
aaggttgaaggtcatgtgatcagcatgtgccatagctctaagagtgacacgttggttctg
cagctggaagatggacagatcaggagagtgaactgggactccgcagcaataacagtgact
gaatggaaggattctttagagttcagtgttaactttccccagccctgtgttcacactgca
ctgtgtaccatcaacggagaggagcatttagtaggactgacagaaagatcccacctctat
attggtaacaatgtggtcgcgtctaatatttcctcctttgtggtgtatgatgagttcctc
cttctcaccacacactctcacatctgccgttgcttccacctgaccacactgtcaatcaaa
gatgtgcaggtggctctgagttcagaagcagctcaaaatgatgagagtgtgcgcagggtg
gagagaggatctcgcatcgttactgtggtgcctcaggacaccagactcatcctacagatg
ccccgtggtaacctagagactatccatcatcgagctcttgtgcttgctcaagtcaggaag
tggcttgatgagctgaaatttagagatgctttcgagtgcatgaggaagctgcggatcaac
ctgaacctaatctacgaccacaatccgaacgtgttcttggataacgcggagctatttctg
aaacagattgcttcagtcaactacatcaacctttttcttacagagctcaaagaggaagat
acgacgaagacaatgtacccgtgtccagtgagttctgcatgccagactgcttcagtaaca
gcgagagaaggtcaggggaggaggaaagtggacattgtctgtgatgctctgcgatcagcc
atggagacacttgatccacataaatactgcttgtgcattttaacatctcatgtgaggaag
acgaagccagaacttgagactgctctacagaaagtccatgaattgcgtgtgaacccaccc
agtgcagaaaatgcagtgagtgcagaggaggctctgaagtatctcttgttcctggtcaac
gttaatgaattgtatgaacactctctgggaacctatgactttgacctggtgctcatggta
gcggaaaagtctcagaaggaccctaaagaatatctttccttcctgaacatgctgaaaacc
ctggaacctaattaccagcgctataccatagacaaacacctgaagagatacaagaaggcc
ttgcatcacctcagcaagtgtggtgaggagcacttcactgagttattaaacctggtgaga
gaccagaagctatacaccgaagctctgcagctcttccctgcagatagccagcaatacaag
acgctaagtgtggcctttgctgaacacctgttggaggatcagcaggctgagcaggcaggg
ttgttgctatggcgatgtgcagagatgccccgtgctttgcaggccttcatcagctgcacc
agctggagacacgccctcgccgtggcaacgcacatccctgtgccacccacacagctgaca
cagcttgcacgagatctagcagtttttttcaatgtttcagagaagcttctggaaatgagg
cgacatacagaggctgctctgctgctggaacagtatgctaaggactgcgaggaggctatt
tctgccttgattgaaggagctgcatgggaggaagctctcagactaatttacctttaccac
agaccggacatcattgaaaccaatttgaagcctgcgcttttggaagctcacagtactcag
atggcctttgtggactctcaaagggctctgttcacacgccataaaaacagactggccgtt
gtgcgagagcagaaagagaaggctagactggagtttgttgatgatgacggccaagactgc
gcagacgctgaactctactcagaggccagcagcgtcctgaccggcagccgtctcggatca
aagtattcgcacagcaactcccgcatctcctcgagatcatctaagaaccgcaggaaagct
gaaggaaagaagcacagcttaaaggaaggaagcccctttgaggacattgcccttctccat
gccattatccagatcatccacgtcgttgacaagatgagggaggaaatccatagtctcctg
aaggcactgatactgtttcagtttgacaagctggccagaagcctgcagctagactacagc
atgctgcttcggctcatcgacacgggcatccctgagatctggcatgaaggaattcaacaa
agccaaactccaatcacagggcccaattcaacagccaacagcatcatggcttcgtttcag
cagcccagaccaaccacagttcccctgcaggatgcagagatcctcacaccacccaagatg
cgccagtctgtcaaatggaaactctcaatcctagaatag
DBGET
integrated database retrieval system
