KEGG   Ictalurus punctatus (channel catfish): 108275199
Entry
108275199         CDS       T04658                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ipu03041]
    108275199 (smu1a)
Spliceosome [BR:ipu03041]
 Complex B
  Other components
   Complex B specific factors
    108275199 (smu1a)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st LisH_TPL NBCH_WD40 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_BBS7 Beta-prop_EIPR1 Beta-prop_VPS8 WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F DUF7165 Beta-prop_NOL10_N VPS8_N TFIIIC_delta Ricin_B_lectin zf_topless LisH PROPPIN LisH_PAC1
Other DBs
NCBI-GeneID: 108275199
NCBI-ProteinID: XP_017341327
Ensembl: ENSIPUG00000007118
UniProt: A0A2D0SF26
LinkDB
Position
14:10533467..10540801
AA seq 513 aa
MSLEIESADVIRLIMQYLKENSLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RYERAHSKGVTCLSFCKDSSQLLSASFDQTIRVHGLKSGKCLKEFRGHSSFVNEAAFTPD
GHHVISASSDGTVKVWNMKTTECTSTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGISHHPHQNLIATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctctcgaaatcgaatcagcggacgtgattcgtctgatcatgcagtatttaaaggaa
aatagcctgcaccgcacccttgcgacactgcaggaggaaaccaccgtgtccctcaatact
gtagacagtattgagagttttgtggcagatatcaacagcggtcattgggacacggtgttg
caggctatccagtcactcaaactgccagacaagacactgattgatctctatgaacaggtt
gtgctggagctgattgagctgagagagcttggtgctgccaggtctttgctgagacagacc
gaccccatgatcatgctgaaacagactcagcctgagcgctacattcacctggagaacctg
ctcgcccgttcctactttgacccaagagaggcgtaccctgatggcagcagtaaggaaaag
cggcgggcggcaattgcccaggctctggcgggggaggtcagcgtggtgccaccctctcgt
ctcatggccttgctcgggcagtctctgaagtggcagcagcatcagggtctcctgcctcct
ggtatgaccatcgatttgttcagaggcaaagctgcagtgaaggatgttgaggaggagcga
ttccctacacagctgagcaggcacatcaagtttggacagaagtcccatgtggagtgctcc
cgcttctctcctgatggtcagtatctggttactggttctgtagacggcttcatcgaggtg
tggaatttcacaacgggcaagatcagaaaggatctgaagtaccaggcgcaggacaacttc
atgatgatggatgacgcagtgctgtgcatgtgttttagcagagacacagagatgctggct
acgggagcccaggatggcaaaataaaggtttggaagatccagagtggacaatgtttgcgg
cgatacgaacgtgctcacagtaagggtgtgacatgtctgagcttctgcaaggatagcagt
cagctcctctcagcctcgttcgaccagaccatcagagttcatggtctgaagtcaggcaag
tgtctgaaggagttccgaggccattcctcgtttgttaatgaagccgcattcactcctgat
ggccaccacgtcatcagcgcctcctccgatggaactgtgaaggtctggaatatgaagacc
acagagtgcacaagcacgtttaagtctctcggcacctcggcgggcacagacatcacggtg
aacaacgtgatcctgcttcccaagaaccctgagcattttgtggtgtgcaatcggtccaac
actgtggtcattatgaacatgcaggggcagattgtgaggagcttcagctctggtaagcga
gaagggggagatttcgtgtgttgtacactttcccccagaggagagtggatctactgtgtg
ggagaggactttgtgctttactgcttcagcacagtcactggcaaactggagagaaccctg
actgtccatgagaaggatgtgattggtatcagccaccaccctcatcagaacctgatcgcc
acatacagtgaagatggcctgctcaagctctggaaaccttaa

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