Ictalurus punctatus (channel catfish): 108275260
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Entry
108275260 CDS
T04658
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108275260 (lingo1a)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
108275260 (lingo1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
ig
Ig_2
LRR_9
LRRNT
LRR_RPS2
Ig_C17orf99
V-set
Motif
Other DBs
NCBI-GeneID:
108275260
NCBI-ProteinID:
XP_017341436
Ensembl:
ENSIPUG00000014376
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Position
14:complement(3356109..3393710)
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AA seq
615 aa
AA seq
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MVAVDVSGHSYLVACWQPILILLLATVLSGSTTGCPSRCECNAQDRAVVCHRKKLMSVPE
GIPSETRYLDLSKNRIKTINPDEFSGFPNLEELELNENTISTIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTRLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLNSLEHLTLEKCNLTSVPTEAFTHLHSLNTLCLRNLNINSIRDYSFKRLFRLKVLEIA
NWPYLDTMTTNCLYGLNLTSLTITNANLTSIPYVALRHLVYLRFLNMSYNPIVIIEGNKL
HDLLRLQEFHLVGGRLAIIEPYSFRGLNYLKILNVSGNALNTLEESAFHSVGNLETLVLY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCTSPEFVQGKEFKDFPDILQPNYFTCRKSRIR
DRKAQQTYVDEGTTVHFACQADGDPAPVIMWLSPQKQFITPKTIGRLTMFPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTAVAHLHVHSYSPDWPNQPNKTFAFISNQPSDSGPNGTKAT
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGLS
SGAADAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtggcagtggacgtaagtgggcacagctacttggtggcgtgctggcagcccatccta
attttactgcttgctactgtgctgtccggctctaccacaggctgcccatcccgttgcgag
tgcaatgcccaggatcgtgctgttgtgtgccaccggaaaaagttgatgtcagttcctgag
ggtattccatctgagacaagatacctagacctcagtaagaaccgcattaaaacaattaac
ccagacgaattctctgggtttcccaacttggaggagctagaattgaatgaaaacaccata
tccaccattgaacctggggcctttaacaacctgtatggccttcggactcttgggctgcgc
agcaacaagcttaaacttattcagctgggtgtattcacaggcctcagtaaccttaccagg
cttgatatcagtgagaataaaatagttatcctgctagactatatgttccaggatctctat
aatctacgctctctggaagtgggtgataatgacctggtgtttatatcccaccgagcattc
catggcctcaacagcctggaacacctgacactggaaaagtgcaacctgacctctgttccc
acagaggcctttactcatttgcacagcctcaacactttgtgtctgcgcaatctcaacatt
aacagcatcagagattattctttcaaacgcctctttcgtctcaaagttctggagattgct
aattggccatacctggacacaatgactactaactgcttgtacggtttgaatcttacatcc
ttaacgatcaccaatgcaaatttaacctcgatcccatatgtggcactccgccacctggtt
tacctacgattcttaaatatgtcttacaaccccattgtaatcattgaagggaacaagcta
catgacctgctcagactgcaggagtttcacctggttggtggtagactggctataatagag
ccatattcatttagaggactcaactatctaaagatcttgaatgtgtcagggaatgcttta
aataccttggaagaatcagctttccactcagtgggaaacctggagacactggtgctatat
gacaaccctctggcatgtgactgtaggcttctctgggtattccgtcgcaggtggaggctc
aacttcaaccgccagcagcccacatgcacctcacctgagttcgtccagggaaaagagttc
aaagatttccctgatatcttgcagcctaattacttcacatgccgcaaatcaagaatccgg
gaccgcaaagcacagcagacgtatgtggatgaaggaacaactgtgcattttgcatgccag
gcagatggagatccagccccagttatcatgtggctttccccacaaaagcagttcattacc
ccaaaaacgataggaagacttaccatgtttcctgatggtactttagaggtgcgctacgct
cagatccaagacaatgggacatatgtgtgtattgcaagtaatgcaggtggaaacgacact
gctgttgctcaccttcatgtccacagctactctcctgactggcccaaccagcccaacaaa
acctttgctttcatttctaaccagcccagtgacagcggtcccaatgggacaaaagctact
gttcctttcccctttgacatcaagactcttatcattgccaccaccatgggattcatctcc
ttccttggagtggtattattctgtttggtattgctgtttctgtggagccggggcaaaggt
aacactaaacacaacatcgagattgagtacgtaccacgtaaatcagatgcaggactaagc
agtggtgctgctgatgcacctcgcaaatttaatatgaaaatgatttaa
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