KEGG   Ictalurus punctatus (channel catfish): 108275260
Entry
108275260         CDS       T04658                                 
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
  KO
K23533  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ipu04131]
    108275260 (lingo1a)
Membrane trafficking [BR:ipu04131]
 Endocytosis
  Lipid raft mediated endocytosis
   RhoA-dependent endocytosis
    108275260 (lingo1a)
SSDB
Motif
Pfam: LRR_8 LRR_5 LRR_4 I-set Ig_3 LRR_1 ig Ig_2 LRR_9 LRRNT LRR_RPS2 Ig_C17orf99 V-set
Other DBs
NCBI-GeneID: 108275260
NCBI-ProteinID: XP_017341436
Ensembl: ENSIPUG00000014376
LinkDB
Position
14:complement(3356109..3393710)
AA seq 615 aa
MVAVDVSGHSYLVACWQPILILLLATVLSGSTTGCPSRCECNAQDRAVVCHRKKLMSVPE
GIPSETRYLDLSKNRIKTINPDEFSGFPNLEELELNENTISTIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTRLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLNSLEHLTLEKCNLTSVPTEAFTHLHSLNTLCLRNLNINSIRDYSFKRLFRLKVLEIA
NWPYLDTMTTNCLYGLNLTSLTITNANLTSIPYVALRHLVYLRFLNMSYNPIVIIEGNKL
HDLLRLQEFHLVGGRLAIIEPYSFRGLNYLKILNVSGNALNTLEESAFHSVGNLETLVLY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCTSPEFVQGKEFKDFPDILQPNYFTCRKSRIR
DRKAQQTYVDEGTTVHFACQADGDPAPVIMWLSPQKQFITPKTIGRLTMFPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTAVAHLHVHSYSPDWPNQPNKTFAFISNQPSDSGPNGTKAT
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGLS
SGAADAPRKFNMKMI
NT seq 1848 nt   +upstreamnt  +downstreamnt
atggtggcagtggacgtaagtgggcacagctacttggtggcgtgctggcagcccatccta
attttactgcttgctactgtgctgtccggctctaccacaggctgcccatcccgttgcgag
tgcaatgcccaggatcgtgctgttgtgtgccaccggaaaaagttgatgtcagttcctgag
ggtattccatctgagacaagatacctagacctcagtaagaaccgcattaaaacaattaac
ccagacgaattctctgggtttcccaacttggaggagctagaattgaatgaaaacaccata
tccaccattgaacctggggcctttaacaacctgtatggccttcggactcttgggctgcgc
agcaacaagcttaaacttattcagctgggtgtattcacaggcctcagtaaccttaccagg
cttgatatcagtgagaataaaatagttatcctgctagactatatgttccaggatctctat
aatctacgctctctggaagtgggtgataatgacctggtgtttatatcccaccgagcattc
catggcctcaacagcctggaacacctgacactggaaaagtgcaacctgacctctgttccc
acagaggcctttactcatttgcacagcctcaacactttgtgtctgcgcaatctcaacatt
aacagcatcagagattattctttcaaacgcctctttcgtctcaaagttctggagattgct
aattggccatacctggacacaatgactactaactgcttgtacggtttgaatcttacatcc
ttaacgatcaccaatgcaaatttaacctcgatcccatatgtggcactccgccacctggtt
tacctacgattcttaaatatgtcttacaaccccattgtaatcattgaagggaacaagcta
catgacctgctcagactgcaggagtttcacctggttggtggtagactggctataatagag
ccatattcatttagaggactcaactatctaaagatcttgaatgtgtcagggaatgcttta
aataccttggaagaatcagctttccactcagtgggaaacctggagacactggtgctatat
gacaaccctctggcatgtgactgtaggcttctctgggtattccgtcgcaggtggaggctc
aacttcaaccgccagcagcccacatgcacctcacctgagttcgtccagggaaaagagttc
aaagatttccctgatatcttgcagcctaattacttcacatgccgcaaatcaagaatccgg
gaccgcaaagcacagcagacgtatgtggatgaaggaacaactgtgcattttgcatgccag
gcagatggagatccagccccagttatcatgtggctttccccacaaaagcagttcattacc
ccaaaaacgataggaagacttaccatgtttcctgatggtactttagaggtgcgctacgct
cagatccaagacaatgggacatatgtgtgtattgcaagtaatgcaggtggaaacgacact
gctgttgctcaccttcatgtccacagctactctcctgactggcccaaccagcccaacaaa
acctttgctttcatttctaaccagcccagtgacagcggtcccaatgggacaaaagctact
gttcctttcccctttgacatcaagactcttatcattgccaccaccatgggattcatctcc
ttccttggagtggtattattctgtttggtattgctgtttctgtggagccggggcaaaggt
aacactaaacacaacatcgagattgagtacgtaccacgtaaatcagatgcaggactaagc
agtggtgctgctgatgcacctcgcaaatttaatatgaaaatgatttaa

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