Ictalurus punctatus (channel catfish): 108275419
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Entry
108275419 CDS
T04658
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108275419 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108275419 (lrrc4ca)
Cell adhesion molecules [BR:
ipu04515
]
Immunoglobulin superfamily
NGL family
108275419 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
LRR_9
Ig_2
LRRNT
Sp38
DUF7617
Ig_6
DUF6821
Syndecan
Calcyon
DUF4293
RIFIN
Motif
Other DBs
NCBI-GeneID:
108275419
NCBI-ProteinID:
XP_017341714
Ensembl:
ENSIPUG00000024105
UniProt:
A0A2D0SG73
LinkDB
All DBs
Position
14:complement(13391040..13458378)
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AA seq
645 aa
AA seq
DB search
MLNKMTFFPQQQMMRGPRWNRALSDPLFILLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRSIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLNNLRYLNLGMCNLKEIPNLTPLVRLDELEMSGNQLSVIRPGSF
KGLVHLQKLWMMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCDCDILWLSWWLKEVVPANTSCCARCSTPASHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRASSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSTFSYFTTVTVETIEPSNDEGNNIVHQKVGPT
TSSGVWETSSALSSTMTTQTQVSTKATEKTYTIPVTALGDGSLNTLDEVMKTTKIIIGCF
VAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCMATGPTLEGQLTLARLEH
EHLNHYNTYKTAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgaccttcttcccacagcagcagatgatgagaggtcctaggtggaac
cgggccttgtctgacccattgtttatactgttgttggccttgcaattgctagtggttgct
ggcttggtgagagcccagacttgtccatccgtctgctcttgcagtaatcagttcagtaag
gttatctgtacacgccgtggcctgagagatgtaccagatggtatctcaacaaacacgagg
tacctaaacctacaagaaaatttaatccaggtgatcaaggtagacagcttcaagcaccta
cggcacctggaaatcctgcagctcagcaagaaccatattcgtagcattgagattggagca
tttaatgggttggccagcttaaacacactggaactctttgataacaggttaactactata
cctaatggagcatttgagtatctgtcaaagttaaaggagttatggctgcgtaataatcca
attgagagcataccatcctatgccttcaaccgggtgccctcactgagaaggctagatttg
ggtgagttgaaaaggctttcatatatttcagaaggtgcttttgaaggcctaaataacctg
cgttacctgaaccttggcatgtgtaatctaaaggagatccctaatctcacacctctggta
cgcttagatgagctggagatgtcaggaaatcagctctcagttatacgaccaggttctttc
aaaggccttgtccacttgcagaaactgtggatgatgcacgctcagatccaaacaattgaa
aggaatgcctttgatgatcttcagtcacttgtggaactgaatttggctcataataacctt
accctgctccctcatgacctcttcacaccgctacaccatttggagagggtgcacttgcac
cacaacccatggaattgtgactgtgacattctctggcttagctggtggttaaaggaagta
gtaccagccaataccagctgttgcgctcgctgcagcacccctgctagccacaagggacgg
tacattggtgagttggatcaaaactatttccactgttatgcacctgtcattgtggagcca
cctgctgatttgaacgtgacagagggaatggcagcagaactaaaatgccgagcaagttca
ctgacatcagtcagttggattacccccaatgggtctatcatgacgcatggcgcatacaag
gtgcgcatttctgtgctgaatgatgggacattaaattttacaaatgtcacaatgcaggac
acagggacatatacatgtatggttagcaactcggcaggcaacaccactgcctctgctaca
ctaaatgtatcctcaacagagaacagcacttttagctactttaccacagtgaccgtagag
acaattgagccatcaaatgatgaagggaacaacatagtacaccagaaagtaggtccgact
acttcttctggagtgtgggagacatcttctgcactgtcatcaaccatgacaacccaaacg
caagtctccaccaaggccacagaaaaaacatacactatcccagtcacagcactgggagat
ggctccctcaacaccctagatgaggtgatgaagaccactaagataatcattggctgcttt
gtggccatcacactaatggctgcagttatgctgatcatcttctacaaaatgcgcaaacag
catcaccagcagaatcaccatgcaccaacacgaaccattgagatcatcaatgtcgatgag
gactgcatggctactggaccaaccttggaaggtcaactgaccctggcacgtcttgagcat
gagcatcttaatcactataatacttacaagacagcatacaatcatgcatctaccatcaac
tctatacacagctctgcacacgaacctttgcttattcgggccagctcaaaagacaacgta
caagaaacccagatctga
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