Ictalurus punctatus (channel catfish): 108275439
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Entry
108275439 CDS
T04658
Name
(RefSeq) laminin subunit alpha-4
KO
K06241
laminin, alpha 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108275439
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108275439
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Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_II
Laminin_G_3
Laminin_I
Laminin_EGF
DUF5089
Motif
Other DBs
NCBI-GeneID:
108275439
NCBI-ProteinID:
XP_053541993
UniProt:
A0A9F7RR50
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Position
2:11..18009
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AA seq
1622 aa
AA seq
DB search
MGCRRCVCATAALHSSCNTLTQACQCRPGAGGRYCESCLPGYWDYTHTGCKKCDCPEGNC
DVHTGECLPEMSQVSECSIDCDECIWHLIGDVRQSNKTVDQLRNSILNISTGAAAYDRLK
YYNYTAHTLRVQFVGWRNKSVVMRKHTGELEEETPHLVTDTELLTHQEEVVMSVGMQVDS
DTLHSFTLAEMLAVNLTSLNVLIEDMISDWEVYSVQQEMDPEEQKQKESEAEHMLSHMRT
QNLSPKHTLATQENAHTHQLLQHVREMEKSVLLMEGRLPAVRELMKRFSSSLTHGQNHLN
KAHDTLQQTHNTHTLNLLHLQRREAHKHRLMENYNGVNQTVMSANGILVEASVGVADLGI
MVTNVTEYHAEVDGAAASIQERTDQLSKADHNLVQRATEHAHELQRHAHELQHNLKGSDT
HGFVQKALEASNVYDNIVKYIDEADVISMSTLNMSNRTEDALDGLQSQLNFLKTQSGHTF
KESVTRNSEYKEVEVNVADAKKYIEETREMLQTSRDTLEELVTSMNTLQRVRKLQSTQEA
AERALNHSAEVLGVITPIREQVDEWSKNMKDNQYSTSAYEQAVDSALNTVEGLSIIVPQL
LTKLRDVEEKKPVNVSTNIMRVRELIAQARSVASKVQVSMKFNGQSSVELHPPADVAELK
AVTSISLYVRVDPDSDPIEDRFLLYLGDKNGNKDYMGMAIKNDNLVFVYKLGGDDVEIPL
SSKPVSSWPPVFNHVRVERLGRHGKVYLTVPSQDTAAEQKFIQKGEWDGTESLFQLDPRD
TVFIIGGAPMDVKLPPALSLAPFVGCVELSSLNNEVISLYNFKKLNDMNLAVSKPCPRYK
LAFSQGRVASYLFDGSGYALVRNIERRGRISVFTRFDIEVRTVTHNGILLLMANEGNFFV
LEMRNGFLRLVYDFGFVNGPIVLEGNLTKLQINDARYHEVSVIYHQSKKVILLVDRSFIK
STENEKKTLPFNDIYIGGAPSDMLQSRPEFSSLIGLKGCVKGFQFQKKDFNLLEEPGTIG
ISSGCPEESFMSHKAYFTGDGYLSSTAKISPFSSFEGGMSFRTTQPSGLLFYHRDGTDEF
SLSLENGAVVLHSRGTKVKSKKHYSDGRPHFLVASVTKQKYQLVVDDRDKQEKKNPGSAL
QGDGVKEFYYGGSAQSNINNFTGCISYAYISRQDRDIEAEDFQRYSENVGVSLQDCPVEK
TPPAVRHTRSARHTPYNTHSLPHTPAALHQMSIDQPVLPQSILGVQDDPLFAPEVEATSC
YLSSRPRAIRNAHYFSSNSRQSYDGIAEVIRERLKFSVSVRTRSWRGMIVAMHGASDEDF
IALFLHDGKLVFMFSSARDVLRLSSTDTYNDGSWHNVVFIRKGNRGLLVVDGVLVMEDKT
QSDDFTLNLQNPLYVGSLPGGYTNKNMEVTAGFSGCLRDLRLNDHFLLSVPISYRVTPCL
EGKTEEGMFFFKEGGHAQLYTPINVGERLEVVMEFRPRVATALLLHLYIKPEVNLSLYLQ
NGQVFVQVNKETCTVNVPAENGVCDGNWHRVKVVRQGSELIVDVDGEQKRVNSTSVPLKK
DRVLMPLYIGGAPKNTIEPVSVTMKSSYVGCVRNVSINQLSIKNKHTLFTEGVITVDGCP
VA
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaggaggtgtgtgtgtgcaactgcagctctgcactcgtcctgtaacacactc
actcaggcgtgtcagtgccgcccgggggccggaggacgctactgcgagagctgcttacca
ggctactgggactacacacacactggctgcaagaagtgcgactgtcccgaggggaactgt
gacgtccacactggagagtgtctacctgagatgtctcaggtcagcgagtgcagcattgac
tgtgatgagtgtatctggcacctgattggtgatgtacgtcagtccaataaaacagtggat
cagttgaggaacagcatcctgaacatctctactggagctgcagcatacgatcgcctcaaa
tactacaactacactgcacacactctcagggtgcagtttgtaggatggaggaataaatca
gtggtgatgaggaaacacacgggagagctggaggaggaaacaccacaccttgtgactgac
acagagctgctcacacaccaggaggaggttgtgatgtcagtagggatgcaggtggatagt
gacacactccacagcttcacattagccgagatgctagcggttaatctgacgtcccttaat
gtgttaatagaagacatgatcagtgattgggaggtgtacagtgtgcagcaggaaatggat
cctgaggagcagaagcagaaggagagtgaagctgaacacatgctgagtcacatgagaacc
cagaatctgtcacccaaacacacactcgctacacaggagaatgcacacacacaccagctt
ctccagcatgtgcgtgagatggagaagagtgtgttgctgatggagggacgacttcctgca
gtcagagagttgatgaagcgctttagctcgagtctcacacatggccagaatcacctcaac
aaagcacatgacacactgcagcaaacacacaacacacacacactcaacctgctccaccta
caacgcagagaggctcacaagcatcgtctaatggagaattataacggtgtcaatcagact
gtcatgtcagccaatggcatcttagttgaggcgtctgtgggcgtggcagatttgggtatc
atggttacgaatgtgacggaataccatgcggaggttgacggcgctgcagcgtcgatacag
gagagaaccgatcagctctctaaagcagatcacaatttagtgcagagagctactgagcat
gctcacgagctgcagagacacgcccacgaactgcagcataatctgaagggcagtgataca
catggatttgttcagaaagctctggaagcgtcgaacgtctacgacaacatcgttaaatac
atcgatgaagctgacgtgatcagcatgagcacgctgaacatgtccaacaggacagaggat
gcccttgacggtttacagtcccagctgaacttcctcaaaacacagagcggtcacacgttt
aaagagtctgtcacacgcaactccgaatacaaggaggtggaggtgaacgtcgctgacgcc
aaaaaatacatcgaggagaccagagaaatgctgcagacgtcacgggacacactggaggag
ctcgtcaccagtatgaacacactccagagagtccggaagctgcagtccactcaggaggca
gcagagcgcgctctcaatcactccgctgaagttctgggggtcattaccccaattagggaa
caagtggatgaatggagcaaaaacatgaaggacaatcagtactccacctccgcctatgaa
caggccgtggactccgcccttaacacagtggaaggtctgtcgataatcgtacctcagttg
ttgacaaagctgcgtgatgtggaagaaaagaaaccagtcaacgtgtccaccaacatcatg
agggtcagagaactcatcgctcaggctcgcagcgtcgccagcaaggtgcaggtatcaatg
aagtttaatggtcagtcctcagtggagctccacccacctgctgatgtagccgagttgaag
gctgtgacctctattagcctgtatgtgcgtgtggaccctgactcagaccccatcgaggac
cgcttcctgctttacctcggagacaagaatggcaataaggactacatgggcatggctata
aagaatgataacctggtgtttgtgtataaattgggtggagacgatgtagaaattccactc
agctccaaacctgtgagctcctggcctcctgtgttcaaccatgtgagagtggagagactg
ggtcgtcatggtaaggtgtatttaacagtccccagtcaggacacagcggctgagcagaag
tttatacagaaaggggaatgggacggaactgaatctctgttccagctggaccccagagac
accgtgttcatcatcggaggagctccaatggatgtcaagctcccacctgctctgagttta
gctccatttgttggctgtgttgaactctcctctctcaataatgaagtcatcagtctgtac
aacttcaaaaaactgaatgacatgaaccttgctgtgtccaaaccctgtcccaggtataag
ttagcgttctctcagggccgtgtagcgagttacctgtttgatggatctggttatgcgtta
gtgcggaacattgaaaggcggggcaggatcagtgttttcacacggtttgacattgaagtg
cgcacagtcactcacaacggaattctcctcctcatggctaacgagggtaatttcttcgta
ctggagatgaggaacgggtttctgcgattggtttatgatttcggatttgttaacggtccc
atcgtgttggaggggaacctgaccaaactgcagatcaacgacgccagataccatgaggtg
tcggtgatctaccaccagtctaagaaggtcattctcctggtagaccggagtttcattaaa
tccacagagaacgagaagaaaactctgccctttaacgatatttacatcgggggagctccg
tcagatatgttacagtcacggccggagttctcctctctgatcggactgaaaggatgtgta
aaaggatttcagttccagaagaaagactttaacctgctggaggaaccggggaccatcggc
atcagcagcggctgtccagaggagtcctttatgtcacataaagcatacttcacaggtgat
ggttatttgagttccacagcgaaaatctctccgttcagctcgtttgaaggaggaatgagc
ttcagaacaacgcaaccatctggattactgttctaccacagagacgggacggatgagttc
tctctctctctggagaacggtgcagtagttcttcactccagaggaactaaagttaaatcc
aagaagcactacagtgatgggcgacctcacttcctggtcgcttctgtcacgaagcagaag
taccagctggtggtagatgaccgagacaagcaggagaagaagaacccgggttctgcactt
caaggagacggagttaaggagttctactacggaggatctgctcagagcaacatcaacaac
ttcactggctgtatcagttatgcttacatcagcaggcaggaccgtgatatcgaggcggag
gatttccagcgttacagtgagaatgtgggtgtgtccctgcaggactgtcctgtggagaag
acgccccctgctgtacgacacacacgctctgcacgacacactccttataacactcactcc
cttccacacactcctgcagccttacaccagatgagcatcgaccaacctgtcctgcctcaa
agcattctgggagtgcaggatgaccctttgtttgctccagaggtggaggccacatcttgt
tacctctcatcccgcccacgtgctatcaggaacgcccattattttagtagcaacagtcgg
caaagttatgatggcattgctgaggtcattagagaaaggttaaagttctctgtgtcagtg
aggacacgctcgtggcgggggatgattgtggctatgcatggtgcgagtgatgaagacttt
attgcactcttccttcatgacggtaaactcgtcttcatgttttcctccgcacgagacgtc
ctgcggctcagcagcacagacacatacaacgatggaagctggcataacgtggtgtttatc
agaaagggtaacagagggctgttggttgtggacggtgtgttagtgatggaggataaaact
cagagtgacgacttcaccctgaacctgcagaatccactgtatgtgggcagccttccaggt
ggatacaccaacaagaacatggaggtgacagccgggttctcagggtgtctgagagatctg
cgtctgaatgaccacttcctcttgtctgtccccatcagttaccgggtgacgccgtgttta
gagggaaagactgaagagggaatgtttttctttaaggagggaggacatgcacagctgtac
acgcccatcaatgtgggtgagcggttggaagtggtgatggagttccgcccccgtgtggcc
acagcattgttactgcacttatacatcaaacctgaggtgaacctcagcctctacctgcag
aatggccaggtgtttgtgcaggtgaataaagaaacgtgcacggtgaatgttcctgccgaa
aatggcgtatgtgatggcaactggcacagggtcaaagtggtgaggcagggcagtgaactg
attgtggatgtggacggggaacagaagcgtgtaaacagtacgagcgttccgctgaagaag
gacagagtgttaatgccactttacattgggggagcaccaaaaaacaccatagagcctgtt
agtgtgacgatgaagagcagctacgtaggctgtgtgaggaacgtgtccatcaaccagctc
agcattaagaacaaacacacactgttcactgaaggagtcattactgtggacggctgtcct
gtggcctga
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