Ictalurus punctatus (channel catfish): 108275721
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Entry
108275721 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase Topors
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108275721
03036 Chromosome and associated proteins [BR:
ipu03036
]
108275721
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ipu03037
]
108275721
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108275721
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108275721
UBL E3 ligases
108275721
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
108275721
Cilium and associated proteins [BR:
ipu03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108275721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-rbx1
zf-C3HC4_4
RING_XB3-XBAT31
zf-RING_5
zf-ANAPC11
zf_PCFS4
Rad50_zn_hook
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
108275721
NCBI-ProteinID:
XP_017342130
UniProt:
W5U8G5
LinkDB
All DBs
Position
15:8552458..8556642
Genome browser
AA seq
905 aa
AA seq
DB search
MMAPTKIKLRLRKKEKGSTKSSQRQRQQSLRPETSPDSKCPICLDRFVNVASVERCLHRF
CFRCIREWAKNKAECPLCKQPFRSIFHSVKAENDFKEFVVLEDNTSSATTSASATVAVTA
AAIAVAPAGQNDAESTATRPRRSRATRTRRSQRAQDPAPSASSVDGVALDHATLVQRDPA
CLRQLLPWLRRERVMGANPSELRPFLLARTDHILHELVSFARSIEAMQCPPTPSYEEDSG
SQSSIINISEDDDSEEADVTEDTTQERVPPVPMATSSEISLSQSAWDDETPGPSYSTLGH
PQTEEVEPEGNQLGGTGSATEQREHNDDDNDEDECMIVGYVKPMAERTPELVQLSSDSTE
EEEAGNENEAAVMQPVMKAELSLPSQEQAPLSPKPYPSTSHTERGDDLEQSREQDPGKLS
HHRRKHHTLRRGFRKTSHSLSGSRSQTSSESSPPSGHSIKIGRSHVRLSCGEPRRHLSGR
SPAVIAEKGCSSSEELFPTRSISTRDKSSKSFSAWDSPGHDGERKKKRRKRRRERETERS
RSPHRDSRHRHGDRELWLRSSCSSSSDADSHREKPAGKRKYKTRHLERTACRRSSGKSRE
RERSPSVEIIFERRAPDAHSRGRRRRKRSRRKEREQNSPTVITIDSDSGSDRTADRQNNL
VDDDRDDVANDHAVEYQDHTADDNERVTDFSDHTIDYQERLAEFSDRTADDKDCVTDRRN
GTDDYRRGVQKVSDQAAEHQDHTADVRSHAADYKHSVTQDNSNSADYKKVSGYTPDSKRR
AAEVTDRTTDYQESLLDIDDSPDDFQDSVTEIRNRGESTASLLDMLNLEQCLVDVVQPIR
RVEDDSHRAATPLSDTQLLELEDSLLGEGQGALRNGTVDQQEAGFMAHTDPSETEHERDS
RISEP
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgatggcacccacaaagattaagctgcgtttgaggaagaaggagaaaggctcgacaaag
tcatctcagcggcagcggcagcagtcactccgtcctgagacgtccccggactcaaagtgt
ccgatctgcctggaccgctttgtgaacgtggcatctgtggagcgctgcctgcaccgtttc
tgctttcgctgcatccgtgagtgggccaagaacaaagcggagtgcccactttgcaagcaa
ccgttccgctccatcttccactccgtgaaggccgagaatgacttcaaagaatttgttgtg
ttggaggacaacacgtcgagcgcaaccacatcggcatcagcaactgttgcagtgactgcg
gcagcgatagcggtggccccggctggccagaacgacgctgaaagcacggcaacacgacct
cgccgttccagagcaacgaggaccaggcggagtcagagagctcaagaccccgccccttct
gcttcttcggtggatggcgtggctctggatcacgcgactttggtgcagagagatccagct
tgcctgcggcagctgctgccatggctacgccgagagcgagtcatgggagccaatcccagt
gagctccgccccttcctgctggcacgcactgaccacatcctgcacgagctggtgagcttt
gcacgctccatcgaggccatgcagtgtcccccgaccccaagctatgaggaggacagcggc
tcacagtcatctataatcaacatctcagaggatgatgatagcgaggaggcagacgttacc
gaggacaccacccaggagcgggtacccccggttcccatggcaaccagcagcgaaatctct
ctcagccaatctgcttgggacgacgagactccaggcccctcctactccaccctcggtcat
ccacaaacggaggaggtggagcctgaggggaaccaattaggaggaaccggttctgccaca
gaacagcgtgagcacaacgatgacgacaacgacgaagacgagtgtatgatcgtgggttac
gtgaagccaatggctgaacgaactccagaactcgtgcagctctcatctgactccacggag
gaggaggaggcggggaacgagaacgaggcggctgtcatgcagccagtaatgaaggcagag
ttgtcactgccatctcaagagcaggctccactctccccgaagccatatccctccacctcg
cacacggagagaggagacgacctggagcagtcgcgagagcaagatcctgggaagctctca
catcacaggaggaagcaccacactctgaggcgcggctttaggaaaacgtcgcactcgctt
tcagggtcacgttcgcagacgagcagtgagagttccccccctagtggacattctataaaa
atcggcagatcgcatgtaagattgagctgcggagaaccaaggaggcacttatcagggcgg
agccccgccgtaatcgccgaaaaaggctgctcctcatcggaggagctctttccaactcgt
tccatttccacacgggacaaatcgtccaagtctttctccgcatgggattcgcccggtcac
gacggcgagcgcaaaaagaagaggaggaagaggaggagagagagagaaaccgagaggagt
agatctcctcatcgagactcacggcatcgccatggtgaccgtgagctctggcttcgtagc
agctgcagcagcagcagcgatgcggattcgcaccgggaaaaacctgccgggaaacgtaaa
tacaaaacgcggcaccttgagagaacggcttgccgtcggagcagcgggaaatcgagggag
cgggagcgaagtccgagtgtggaaatcatcttcgagcgccgggccccggatgcacactcc
aggggcaggaggcgcagaaagaggagtcggagaaaagaaagagaacagaactcacctact
gttatcactatagacagcgacagcggcagcgatcgcacagctgaccggcagaacaatctc
gtggatgatgacagagacgacgtagctaacgatcacgctgtcgaataccaagatcacacc
gctgacgacaatgagcgcgttacggacttcagcgatcacaccatcgattatcaggaacgg
ctcgctgagtttagcgatcgtactgccgatgacaaagactgcgttacagacaggagaaat
ggcaccgatgactacagacgtggtgttcagaaggttagcgatcaggccgctgagcatcaa
gaccacactgcagatgttcgcagtcacgctgctgattataaacacagtgtgacgcaggat
aacagtaacagcgctgactataaaaaggtaagcggttacactccagactctaaacgccgt
gctgcagaggttaccgatcgcaccactgactatcaggagtcgcttctggacattgacgac
agtcctgacgattttcaggactccgttacggagatcaggaaccgaggcgagtcaactgcg
agtcttttggacatgctgaacctggagcagtgcttggtggacgtggtgcagccaatcagg
agagtcgaggacgacagccacagggcagcgactccgctctcggacacgcagctgctggaa
ctagaggacagtctgttgggggaggggcaaggggcgcttaggaatggcaccgtggaccaa
caggaggcggggtttatggctcacacggacccatctgagacggagcatgagagggactcg
cgtattagtgaaccctga
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