Ictalurus punctatus (channel catfish): 108275800
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Entry
108275800 CDS
T04658
Symbol
dhx35
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108275800 (dhx35)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108275800 (dhx35)
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108275800 (dhx35)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
ABC_tran
AAA_22
FtsK_SpoIIIE
nSTAND3
AAA_29
AAA_19
Motif
Other DBs
NCBI-GeneID:
108275800
NCBI-ProteinID:
XP_017342287
Ensembl:
ENSIPUG00000016363
UniProt:
A0A2D0SHV2
LinkDB
All DBs
Position
15:25183820..25201825
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AA seq
699 aa
AA seq
DB search
MAAPHSIMKFWKPGAEAPGVCEERELNTELSSTAVIYNPHSSLSVEKQRQKLPVFKHRNN
ILYMVESFQTVVILGETGSGKSTQIPQYLLEAGWAAEGKVIGVTQPRRVAATSVATRVAE
ERGAFLGHEVGYTIRFDDCSDPHATRIKFLTDGMLVREMMADPLLKKYSVLMLDEAHERT
LYTDIAIGLLKKIQRKRRDLRLIVASATLDAKKFHDFFNLNETGDPSKDTCGILTVEGRT
FPVEVFYTVSPVPDYVKATVETVLKIHEAEEDGDVLAFLTGQDEVEKVVSMLQDQARSLS
RHGMKKHLRVLPMYAGLPYPEQLKVFERLPPTVRKVVVATNIAETSITINGIAFVLDCAF
VKLRCYNPLTAIESLVVTPISKASASQRAGRGGRNRPGKCFRLYTEEDFEKLPESTVPEM
QRSNLAPVILQLKALGIDNVLRFSFLSPPPAQTMVQALELLFALGGLDQYGRLTEPTGVH
MAEFPLSPMFAKMLLESGNFGCSKEIITIAAMMQIQNVFTVPSNQKKAAAREHRKFAVAE
GDHLTMLNVYEAFVKHQKSSQWCQEHFLNYKGLLRAVTVREQLRRLLNKFKVPRTSSEGD
PDVILRCIVSGFFANAARLHHSGSYRTLRDDRELHIHPNSVLYGEKPPKWVVFNEVVQTS
KYYMRDVTAVESSWLVELAPHFYKQATHGSLGSKRSKVF
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccccactccatcatgaaattctggaaacccggggccgaggcgccgggagtg
tgtgaggagagggagctgaacacggagctgagcagcaccgctgtcatatacaaccctcac
agttccctgtctgtggagaaacagaggcagaagcttcccgtctttaagcacaggaacaac
atcctgtacatggtggaaagctttcagaccgtagtgatcctgggcgagaccggctcgggg
aagagcacacagattcctcagtacctcctggaggcgggatgggccgcagaggggaaggta
atcggcgtgactcagcctcggagagtagctgctacatcggtggccactcgggtagcagag
gaacgtggagcgtttttggggcacgaggtgggatataccatccgatttgacgactgctca
gaccctcacgcaacccgtataaagttcctcacagatgggatgctggtcagggagatgatg
gctgacccgctgctcaaaaagtacagtgtcctcatgttggacgaggcccatgagaggact
ctctacaccgacatcgccatcggccttctgaagaagattcagaggaagaggagggacctg
cgattaatcgtcgcgtccgctacactggatgccaagaaatttcacgactttttcaacctg
aacgaaacgggagacccgagcaaggacacgtgtgggatcctgacggtcgagggccgcacg
ttccctgtggaggttttctacacagtcagtccggttccagattatgtaaaggccacggtg
gaaaccgtgctgaagattcacgaagccgaggaagacggcgatgttctggcgttcctcact
ggacaggacgaggtggagaaggtggtgtccatgctgcaggaccaggctcgctctctgtct
cgccacggcatgaagaaacatctgcgtgtccttcctatgtacgcgggccttccttacccc
gagcagctgaaagtgttcgaaaggttgccacctactgtccgaaaggtggtggtcgccacg
aacatcgccgagacgtccatcaccatcaacggcatcgcgtttgtgctcgactgcgcgttt
gtcaagctgcgctgctacaaccccctcacagccatcgagtctcttgtggtgacgcccatc
tccaaagcctcggcgtctcagagagcgggaagaggcggacgtaaccggcccgggaaatgt
ttccggctttacacggaggaagacttcgagaagcttccggagagcaccgtgcccgagatg
cagcgcagtaatttggctccggttatcctccagctcaaagctctgggcatcgataacgtt
ctgcgcttcagcttcctgtccccgccgccggcgcagaccatggtgcaggcgttggagttg
ctcttcgctctcgggggtctggatcagtacgggcgtctgacggagccgacgggggtccac
atggccgagttccctctcagccccatgttcgccaagatgctgctcgagtcggggaacttc
ggctgctccaaagagatcatcaccatcgccgccatgatgcagatccagaacgtgttcacc
gtgccgtccaatcagaagaaagccgccgcgcgcgagcacaggaagttcgctgtggctgaa
ggcgatcatctgaccatgctgaacgtctacgaggctttcgtgaagcatcagaagagctct
cagtggtgtcaggagcacttcctgaactataagggtctgctgcgtgccgtgacggtccga
gagcagctccgtcgcctgctgaacaagttcaaggttcctcggacctccagcgaaggcgac
ccagacgtgatcctgaggtgcatcgtgtcgggattctttgctaacgcggcgcgcttgcat
cactccggatcctacaggactttacgggatgaccgggagctccacattcatcccaactct
gtgctttacggagagaagcctccgaaatgggtggtctttaacgaggtggttcagacctcc
aagtactacatgcgagacgtgactgcagtggaatcgtcctggctggtggaactggcacct
catttttataaacaggccacgcacggctctctgggaagcaaacggtccaaagtcttctga
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