Ictalurus punctatus (channel catfish): 108275858
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Entry
108275858 CDS
T04658
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04120
Ubiquitin mediated proteolysis
ipu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108275858
04120 Ubiquitin mediated proteolysis
108275858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108275858
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108275858
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
U-box type E3
108275858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
108275858
NCBI-ProteinID:
XP_017342387
Ensembl:
ENSIPUG00000004431
UniProt:
A0A2D0SI51
LinkDB
All DBs
Position
15:19395474..19426840
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AA seq
1372 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGPTSQPTTPLSTPLTSPQRETPPGPLPGPSGASSQPLPPAP
SHSLGLNAQNVTPATSPMGASGVAYRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDID
TASCEKNMSQVDVDSGIENMEVEDSDRREKRNLTEKDSSSNQDVSEEQALQLICKILRVS
WKEQDRDVIFLPSLAAEFQQNPKDVYSDFKDLIGQILMEVLMMSTQSRDCNPFASLTATS
QPITAAKSPDRHLTLVPPSSQGNSPMMPCGGSFGASSLSSLYGCSPYLGQNSARMSAPSV
LTPLPPPSLPPPSVVSPSPPPAPSTAHQLSPSPSAPQLGSPFPTPSAPLPISQRDRPYSL
SSSQGSSFPMSLSPRSGFSPPTHAPSTPLTPQPAPLPSPRHHTLQTPALVPIVPDSPTTT
ARRTAVASWMPSSPFPLPFFALSQDSSDEELEEEEEEDFSGVHFGSSLGASGGGLAGDSG
SDRFTIEACKETEMLNYLIERFDSVGMEERKAPKMCSQPMVSQLLSNIRSQCISHAALVL
QGALTLPRAPLQPSLLVPYMLCRNLPYGFIQELVRMTHQEEEVYKQIFVPILQGLVLAVK
ECSFDSDNFKYPLMALSELCEIKFVKTHPVCTLVTSLPLWCPDPLSPGAGREIQRLSFLG
AFFSLSVFAEDDTKVGDKYFSGPAITMENTRVVSQSLQHYLESARGDLFKILHNILLNGE
TREAALSYMAAVVNRNVKKAQMQTDDKLVSTDGFMLNFLWVLQQLSMKIKLETVDPLYIF
HHKCRLNVSLEETRLKSSLEELKSWLAELHVGPSKFSEPKFPTECFFLTLHAHHLSILPG
CRRYIRRLRAIRDLNRTVEELKNSESQWKDSPLATRHREMLKRCKTQLKKLVRSKACADA
GLLDENLLRRCLQFYSTVIQLIMHIVDPAYPNVALPLNPEIPKSFAALPEFYIEDVAEFM
LFIVQYSPQVLYEPCTQDIATFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRF
FELIENHPLSVNQLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIGHHGT
FLEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEIQEEMKNKEQWDQLPREQQQSR
QSQLTQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNYNLQQLCGPK
CRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMRK
AGIKSTIAIEKFKLLLEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPVQLPSGNI
MDRSIILRHLLNSPTDPFNRQPLTESMLESVPALKERIQAWMREKQGGRFSH
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctcagcgccgacgagattcggagaaggcggctggcccggttagctggagga
ccgacgtctcagccaaccacccctctgagcacgccgctgacgtcaccacagagagaaacc
cctccaggtccactgcccgggccttccggggcctcatcacagcctctgccaccagcacca
tctcattctctgggtctcaacgcccaaaatgtcacacctgccacttccccaatgggggct
tcgggggtggcttatcgcagccagagcagcgagggagtcagctctctctccagctcccca
tccaacagccttgagacacagtctcaatccctgtcccgctcccaaagcatggacatcgat
acggcatcctgcgaaaagaacatgtcccaggtggatgtggactcaggaattgagaacatg
gaagtagaggatagtgaccgcagggagaaacgcaacctgactgagaaggactcatcatct
aaccaagatgtctctgaagagcaggctctgcagctcatctgcaaaattctccgtgtctcc
tggaaggagcaagaccgcgatgtcatctttctgccctcacttgctgcagagtttcagcaa
aatccaaaagatgtctattctgacttcaaagacctgattggccagatcttgatggaagtt
cttatgatgtctacccaatcacgtgactgcaaccccttcgctagcctgacagccacatca
cagccaatcactgctgccaaatctccagaccgccacctgacactggtcccaccctccagc
cagggaaacagtcccatgatgccctgtggagggtcatttggtgccagctcgctgtctagt
ctgtatggatgtagtccataccttgggcaaaattctgccaggatgagtgctccatctgta
ctcacacccttacctccgccttcacttccacctccctctgttgtttcaccctcacctcca
cctgcaccttcaactgcgcatcagctttctcccagtccatcagcgccacaacttggttca
ccctttccaaccccatctgcccccctgcctatttctcagagagatagaccatactcgctc
agctcctctcagggctcctccttccctatgagcttaagccccaggtctggcttctctcct
cctacccatgctccatccacacccttgaccccccagccagctcctctgccatcccctaga
caccacactctccaaacacctgccctagttcccattgtgccggactctcccactactaca
gccagaagaactgccgtggcctcctggatgccctctagccccttcccgctccctttcttt
gccctttctcaagacagcagtgatgaagagctggaggaagaggaggaggaggatttttct
ggggttcattttgggtcaagcctgggtgcatctggcggtggattggctggtgattcaggc
agtgaccgctttaccatcgaggcgtgtaaggagactgagatgctgaactacctcatcgag
cgctttgacagtgtgggcatggaggagaggaaggctcccaagatgtgcagtcagccgatg
gtcagtcagctgctcagcaacatacgctcccagtgtatttcccatgctgctcttgtgctg
cagggggcccttaccctgcccagggccccactgcagccctccctactggtgccctacatg
ctgtgccggaaccttccgtacggctttatccaggagctggtgcgcatgactcaccaggag
gaggaagtgtataaacagatctttgtcccaattctccaagggcttgtgttagctgtgaaa
gagtgttcctttgacagtgacaactttaagtatcctctgatggctttatctgagctttgt
gaaattaagtttgtaaagacacaccctgtgtgcactttggtcacctctctgccactgtgg
tgtcctgatcctttaagccctggggcaggcagagagattcaaagactctcattccttggc
gccttcttcagtctttctgtctttgcagaagatgatacaaaagtgggagacaaatacttc
tcaggccctgctattactatggagaatacgcgtgtggtcagtcagtccctacaacattat
ctggagtctgccaggggtgacctgtttaaaatccttcacaacatcttgctgaacggagaa
acgagggaggctgctctcagctacatggcagctgtggtgaaccgtaatgtgaagaaggct
cagatgcagacagatgataaactggtgtccacagacggcttcatgctgaacttcctgtgg
gtgctgcagcagctgagtatgaagattaagctagagacagtggatcccctctacatcttc
caccacaagtgtcggctgaacgtgagcctcgaggagacccggcttaaatcgagcctggag
gaactgaagagttggcttgcagagctccatgtaggcccctccaagttctcagagcccaaa
ttccctacggaatgtttcttcctgacactacatgcacaccacctgtccatcttgcctgga
tgccgtcgttatattcgcagactaagagccatcagagatctgaacagaactgtagaggag
ctgaaaaacagtgagagccaatggaaagactcccctttggccactcgtcacagggaaatg
ttgaagagatgcaaaacccagctgaagaaattggtacgttccaaggcttgtgctgatgcc
ggcctgctggacgagaatctactgcgcagatgtctccagttctacagcacagtcattcag
ctgatcatgcacatcgtagaccctgcctacccaaacgtcgccttgcccctgaatcctgag
atccctaaaagctttgctgcactgcccgagttttacattgaggatgttgcagaatttatg
ctttttattgtgcagtattctcctcaggttctttatgagccctgcactcaggacatcgcg
accttcctggtggtgttcatttgcagtcagaactacatcagaaacccctacctgattgcc
aagctggtggaggtgttgtttgttactaacccagcagttcagcctcgcacccaacgcttc
tttgagctgatcgagaaccacccgctgtcagtcaatcagctcgtccccgccctcatgaag
ttttacacagatgtggaacatacaggagccactagcgagttctatgacaaattcaccatc
cgttaccatatcagtaccatttttaagagcctttggcaaaacatcggtcatcatggcacc
ttccttgaggagttcaactctgggaagcaatttgtgcgctacattaacatgctaatcaat
gacacaacatttctgctggatgagagcttggagtctctgaagcgcatccacgagatccag
gaggagatgaagaacaaggagcagtgggatcagctgcccagggagcaacagcagagtcgc
cagtcccagctgactcaggacgagagagtgtctcgctcctacctggctttagctacagaa
actgtggacatgttccatattctgaccaagcaagtccagaaacctttcctccgccctgag
ctgggtccgcgactggctgccatgctgaactataatctccagcagctgtgtgggcctaag
tgtcgggacctgaaggtagaaaacccagagaaatacggttttgagcccaaaaagctgttg
gaccagcttactgatatctacctgcagctggactgtgctcgctttgctaaagccatcgct
gatgaccagagatcatatagtagggagctcttcgaagaagtgatttctaaaatgaggaag
gcaggcatcaaatccaccatcgccattgagaagtttaagctgctgttggagaaggtcgag
gagatagtggctcgcaactctcagtctgagatggactacagtgatgctccagatgagttt
aaagatcctctgatggacactcttatgaccgatcctgttcagctgccttctgggaacatt
atggacagatccatcatcctgcgacatcttctaaactccccaactgaccccttcaacaga
cagcctctcactgaaagcatgctggagtcagttccagcgctgaaagaacgcatccaagct
tggatgagggaaaagcaaggcggacgcttttctcactga
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