Ictalurus punctatus (channel catfish): 108275935
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Entry
108275935 CDS
T04658
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Fn3_Dep-1_2nd
YjeF_N
Motif
Other DBs
NCBI-GeneID:
108275935
NCBI-ProteinID:
XP_017342587
UniProt:
A0A2D0SIR3
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All DBs
Position
15:complement(15593772..15633276)
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AA seq
1583 aa
AA seq
DB search
MRREDSGQSRVASGPTVLWCSLGLLSRLPLCPCPMSAFVGIILLILASEVSTQGRLKLTV
LSEDRLQMKWKEAEGPVQGYKVRVRTISDVPEPELMLTTTRGRATVAGLNSKQEYLLQVL
ALNGTVEKLIAKRRFTINVLREEEEARNGNPKHKRKVQAIGSGSGEMDDATEVLESLPTV
LYQDPTTIEPPTIADQEEQEVEKVKDKKKKKKDKNRTKTNDEKVDSRGKPAEEEHKVRKN
TPVTAGSSPKPFECRVGVQADLVLLVDGSWSIGRTNFKKVREFLEGLVTPFRIGPYGVQI
ALSQYSGDPRTEWQLNNFTSKEQLLDAVRNFRYKGGNTFTGQALIHVLEENLKEEVGARS
DTPQFLLLLTDGKSQDDAIAAASRLKNAGVEIIAVGVKNADEAELKQVASEPLELNVYNV
NDFPLLSKLVGRLVRILCGKMEERSKTRRAHPTEDPGLSYPSPTDLRYSELGPKEVRLSW
TGPGRVVQQYRVVFHSSEGQSPQEVVVKGSNSTVMLTGLSSQTQYHVSIFPVYEDNVGSP
LRGIFTTSMLAMPESLEVTASSPSGLRVRWRPAHGATQYMALYSALADGEPDDAQEVKFR
ADETDVELRDLMPSTDYSVTVYALYEDEPSDPVTAIATTFPLPSPLSLQFPMVSHSTLKV
TWVPGAVDVPAHRVTYSTNHGSDVKQVEVAGVNTVLLQNLSSLSKYLVSVQSLYLKGLST
PLTGNITTLRVPAPSELRVTNYSENTLTVRWEPAADDVTSYLIKWISLSGGDLRQLKVNG
ESEGATLEGVEDDKEYQISLSALYADGAQSEAVAIRYSTLFGGGPTSVSISEETAVSMLV
SWVPPNAHVLQYHVSYTPLTGDARENKVLLPGSERRVLLQSLFPDTRYSVLVTAEYRNRE
GGSASAQGKTTSLRVSSVSVVRSDHSSICVSWRPVAAITAYHIVIQALRDKQIKEETVKS
TSSSHCFNELQPETVYRISVHSRLGTVESTAVTILHPTAAAPLRAHVPPRLHPIQKEMCP
EMTIRNSVIKGFNMMEAFGLTQRAHSTVEGVSVEPFIFSTIPSYTLYRDVQLTQSTGFIH
PAGFSPEHTISLAFRLLQDSPKEPFALWQLTDNDFQPKMGVVLDPERKVLLYFSLDYRGE
VQELTFDQPQVHTLFYGSFHKIHLSVSQVSVSLSVDCQRVGERPARPLGNIPTDGFEMLG
KLVRTRGPRSGSAAFQLQSFEIICNITWALEDTCCDLPSQRDEESCPALPYACTCTSNVP
GAPGDTGSPGKPGPRGQKGEKGEGGQKGEMGPPGKAGPEGGLGPLGSLGPRGITVMGKIG
PPGIRGEKGEMGRPGNQGLPGPPGPKGEVGNPGPKGTRGVEGNMGPPGTTGPRGFQGIPG
HPGPVGERGPLGLVGPSGLPGIKGERGEKGEPQSLAIIYDLVTQACEKLVHNEVLKLDAF
LNEIRRTPVPVEEPVGPPGEPGIPGGKGPPGSRGPPGRQGNRGESGRPGYPGEQGRRGLP
GEKGDPGSNVQGPPGIKGFSGPPGESKMGIPGPRGEDGKSGIPGIPGAAGQPGEIGPPGV
CDSSGCHRGGPPVAEDPYYGYQP
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagagaggacagcggacaaagccgcgttgcttcaggtccaacagtgctttggtgt
tctttaggtcttctctcacgtcttcctctctgtccatgtccaatgtcagcctttgttggg
ataattcttctaatactggcctctgaggtttctactcaaggccgattaaaactgacggtt
ttgtcagaggaccggctccagatgaaatggaaggaggctgaagggccagtgcaaggctac
aaagtcagagttagaacaatttcagatgttcctgagccagagctgatgctgaccacaaca
cgtggtcgggccactgtggcaggcctcaactccaaacaagagtatttgctacaagtgctg
gcgctgaatggaactgtggagaaactcatcgctaaaagacgtttcacaattaatgtgctg
cgggaggaggaagaggcccgcaatggaaacccaaagcacaagaggaaggtccaggccatt
ggctcaggctctggtgagatggacgatgccactgaagttctggagtcactgcccactgtt
ctgtaccaggatccaaccactatagaacctcccactattgctgatcaagaggaacaagaa
gtcgaaaaggtcaaagataagaaaaaaaagaagaaagacaaaaaccgtacaaagacaaac
gatgagaaggttgatagcagaggtaaacctgcagaggaggagcacaaagtgagaaaaaac
accccagttacagctggatcctctcccaagcctttcgagtgcagggtcggggtgcaggct
gatcttgtcctgctggtagatggctcctggagtattggacgcactaacttcaagaaggtg
cgggagttcctggagggcctggtcacccccttccgcatcggcccatatggagtgcaaatt
gccctgtcccaatacagcggagaccctcgcactgagtggcagcttaataacttcacatcc
aaagagcagctccttgatgctgtccgaaacttccgatacaagggagggaacaccttcaca
ggtcaggctctcattcatgtcctggaggagaatttgaaggaagaggtcggggccaggtca
gataccccacaatttctgctgcttttgacagacggtaaatctcaggatgatgccattgct
gcagccagtaggctgaagaacgcaggagttgagatcatcgctgtgggtgtaaagaatgcg
gatgaggccgagctgaagcaggtagcgtctgagcctctggagctgaatgtgtacaacgtg
aacgatttccctctgctcagtaaactggttggtcgactggtgcgcatcctgtgtgggaaa
atggaggagcgcagcaaaacaagacgtgcgcatcccactgaagacccaggcctgtcctac
ccgagtcccacagacttgcgatactctgagcttggtcccaaggaggtgcgtttgagctgg
acaggtccgggcagagtggtgcagcagtacagggtggtgttccacagcagtgagggacag
agtccacaggaggtggtggtgaaggggtcaaactccacagtgatgctcactggactgtcg
tcacagacacagtaccacgtgtcgatctttcctgtatatgaggacaatgtgggctctcct
ctgagaggcatcttcactacatcaatgctggccatgcctgagtctctggaggtcactgca
tcctctcccagcggtctccgggtgcgctggaggcctgctcatggagctactcagtacatg
gccctctattcagctctcgctgatggagagcctgatgatgctcaagaggtgaaatttaga
gctgatgagactgatgtagagctgcgagacctgatgccttctacagactactcagtcact
gtgtacgctttgtatgaagatgagccaagtgatcctgtcaccgctatcgctaccacattt
ccactaccatctcctctcagtctgcagttcccaatggtcagtcacagcactcttaaggtc
acatgggttcctggggcagttgatgttcctgcccatcgtgtcacctacagcacaaatcat
gggagtgatgtcaaacaggtggaggtggcaggtgtgaacacagtcttactgcagaatctg
tcctctctgtcaaagtatctggtgtctgtgcagtctctctatttaaaaggcctctctact
cccctcactggtaacatcactacattaagggtgcctgctccgtctgagcttcgggtcact
aactactctgagaacactctaacagtacgctgggagccggctgcggacgacgtgacctcc
tacctgattaaatggatctctctgagtggaggagacctgaggcagctgaaagtgaatgga
gagagtgaaggagccacactggagggggttgaggatgataaagaatatcagatctcacta
tctgccctctatgctgatggagcacaaagtgaggctgtggctataagatacagcaccttg
tttgggggaggtcccactagtgtgtccatctctgaagagactgcagtcagtatgctggtc
agctgggttcctcctaatgctcatgtgctgcagtaccacgtatcctacactcctttaact
ggagatgcacgggagaacaaagtgttgttgccaggcagtgaaagaagagtccttctgcag
tctcttttccctgacactcggtacagcgtgctggttactgctgagtaccgcaacagagag
ggaggcagtgcctccgcacagggcaaaaccaccagtctacgtgtgagcagtgtgagcgtg
gttcggtctgatcattcaagtatctgtgtgtcctggaggccagtagcagcaatcactgca
taccacatagtcatccaggccctcagagataagcagataaaggaggaaacggtcaaatca
actagcagcagtcactgtttcaatgagctacagccagagacggtgtatcggataagcgtg
cactcccgcctaggaacagtagagagcactgctgtcactattctccatcccacagctgca
gcaccattaagagcacacgtccctccaagactacatcccatacaaaaggaaatgtgtcct
gagatgactatcaggaatagtgtgattaaaggctttaacatgatggaggcatttggtctg
actcagagagcccactccactgtggagggtgtttcagtggagccttttatcttcagcact
attcccagctacaccctctacagagacgtacagctgacccaaagcacaggctttatccat
ccagcaggcttttctccagagcacacaatcagtttggccttccgcctgctgcaagactcg
cccaaggagccctttgctctttggcagctcactgacaacgatttccagcccaaaatggga
gtggtgctggaccctgaaaggaaagtgttgctctacttcagtctggactacagaggagaa
gttcaggagcttacttttgaccagccacaagtccacactctcttttatggcagctttcac
aagattcacctgtccgttagtcaggtgagtgtatccctgtcagtggactgtcagagggtt
ggtgagagacctgcccgtcccctaggaaacatacccactgacggctttgagatgctgggc
aagctagtgaggactcgagggccacgcagtggctctgctgctttccagctgcagtcattt
gagatcatatgtaacattacctgggccttagaggacacatgctgtgacctgccctctcag
agagatgaggagagttgcccagctcttccatatgcgtgcacctgcacttccaacgtccca
ggagcccctggggatacaggatctccggggaaacctggtcctcgtgggcagaagggggaa
aaaggagagggaggccaaaagggtgaaatggggcctcctggaaaggctggaccagagggt
ggcttaggtcctctggggtccttgggccctcgtggtataacagtgatggggaaaataggg
cctccaggaattcggggagagaaaggtgaaatgggaaggcctgggaaccagggtttgcca
ggaccacctggcccaaaaggtgaagtgggaaatccaggacctaagggaaccagaggtgtg
gagggtaatatgggacccccagggactacagggccaaggggcttccagggtataccaggc
cacccagggcctgttggagaaagggggccactaggacttgtagggccctcaggacttcct
gggattaaaggtgagagaggagagaagggagagccacagtctcttgccatcatctacgac
cttgtcactcaggcctgtgaaaagctagtgcacaacgaagtgcttaagttagacgccttt
ctaaatgagattcgtcggactcctgtgcctgttgaggagcctgttggacctccaggtgag
cctggaatcccgggtggtaaaggacccccaggatccagaggtcctccggggcgtcaagga
aacagaggggagtcaggcagaccagggtatcctggtgagcagggacgcaggggtttgcct
ggcgagaagggagatccaggctcaaatgtccagggaccaccaggaataaagggtttttca
ggacctccaggagaaagcaagatggggataccaggccctcgaggtgaagatggtaaatca
ggtattcctggcattcccggagctgcaggacagccaggtgagattggcccccctggtgtg
tgtgacagcagcggctgccatcgtggaggccctccagttgcagaggatccatactatgga
taccagccttga
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