Ictalurus punctatus (channel catfish): 108275997
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Entry
108275997 CDS
T04658
Symbol
lamb2
Name
(RefSeq) laminin subunit beta-2 isoform X1
KO
K06243
laminin, beta 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108275997 (lamb2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108275997 (lamb2)
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Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
LAMININ_IV_B
Laminin_N
F5_F8_type_C
ATG17_like
EzrA
Motif
Other DBs
NCBI-GeneID:
108275997
NCBI-ProteinID:
XP_017342715
UniProt:
A0A2D0SK90
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All DBs
Position
15:15757386..15795499
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AA seq
1793 aa
AA seq
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MRTLLLLVFCGLVTTLAQEPDHPHGCTHGSCYPATGDLLVGREKNLKASSTCGLTKREPY
CIVSHLQEEKKCFQCDSRRPYNSVYNTISHRIENVITSFSPDHKKCWWQSENGKSDVYIQ
LDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGRTWKVYRYFAHDCASVFPGISQGPLGN
VDDLICESRYSDIEPSTEGEVIFRVLDPAIQIEDPYSASIQNQLKITNLRVNFTKLHTLG
DNLLDSRVEIKEKYYYAIYELVIRGNCFCYGHASECAPIDGIRDDIDRMVHGRCVCKHNT
KGLNCEQCDDFHNDLPWKPAEGRDTNACKKCNCNGHSNKCHFDMAVYLATGNVSGGVCDD
CLHNTMGRNCETCKPFFYQDPASDIRDPRICVACNCYPDGSVNRGGCDERDDPTLGMIAG
QCRCKENVEGPRCDRCKSGFFGLSANDPQGCQPCRCDPRGTVSGSPQCDPVRGDCFCKRM
VTGRTCNQCLPEHWALSHDASGCRACECDVGGAVDNQCSMESGQCRCRNHLMGRQCNQVE
TGYFFMALDYYIYEAELAKLGQGCTVEEKEWQSGRPASWTGTGFARVPEGSTLEFFINNI
PYSMEYDVLIRYEPQMPQDWDEVRVKVIRPGPIPTSSPCGNTIPADDLLTVSLPSGSRFM
VLPQSVCLERRVSYTLRLEFISYADKNTIPGFSNANILIDSIALLPRYNSLDMFVVGDPA
SILRKQMYERYRCHESAKSVSRPAMSEVCAKLIFSMSAIINDGALPCQCDPQGSLSSQCD
VRGGQCPCRPNVIGQRCDRCAPGSYGFGPAGCKACDCSQEGSRSQFCDQRTGQCSCLPGA
FSQRCDSCQAGHWGFPSCRPCQCNGHTEECHQRTGVCLNCRGHTAGDQCQKCANGYYGNP
VLGSGSRCQPCPCPDGPESGRHFAASCYQDNHSRQVVCNCKQGYTGIVKRSGGTVLKRAR
CEDCAPGYYGNPSQPGGRCQTCRCSNNIDLSDPESCDRRTGECLKCLYNTEGPECAVCKS
GYYGDASRRNCRKCTCNFLGTERSQCLSRDDCLCQRATGQCQCLPHVIGLTCDHCAPNYW
NLAGGHGCEPCNCDPNNAYTSACNEFTGHCQCRDGFGGKTCRDCQENFWGDPRILCRACD
CDSRGIETSQCDRLTGHCACRQGVSGVRCDQCARGFSGMFPACQPCHQCFGDWDRIVQDL
AARTKALVARAQEIQTTGLTGAYEKHFRQLEEKLAQAQGIVNARNATAEAVTNLMGMIEY
LRSRIGEATDTLTQLEGDLTAVQDSNYEASSQLSSLEREAKELNLSSERLNNQLDILKNS
NFLGAYDSIRASYNKSHDAERRTNQSTTDIPSTVSQSADTRRKTERRMAMNKDDFNRKNA
ADKRALTDLNKKVQNLDIKKINEKVCGAPGDVPCSESPCGGVDCRDDERRHCGGLNCNGA
VAVADNALERSKHAEKELVKAMGEVEDLFKQVADAKIKAQEAKDKAQAALMKASDTKNKV
ERSNDDLRDLIKQIRTFLMQEGADPDSIEAVANQVLELSIPASPQQIRHLADEIKDRVRS
LSNVDAILDQTQEDVRKAEQLLTKARNTKNKADRVKNTADSVKQALDDARKAQAAAEKAI
QRARDDIGMTENRLAQIQSETSASEKDLNEAKNKLGHLGQQIEALKAKQANNSMVAARAK
DTATMAQNKANAAKQDLDGELSDKYRSVQDLVNRKASAVQDAKNKAERLRDEAKQLLKDA
QDKLHRLAELEKDYEENQKTLQAKARQLDGLEDKMKMILDAINKQIQIYNTCQ
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgcgcactttgctcctgctggttttctgtggcttggtaacaacccttgctcaagaacct
gatcacccccatggatgtactcatggaagttgttacccagcaaccggtgacctcctggtg
ggtcgagagaagaacctgaaggcgtcgtctacctgtggcctcacgaagagagaaccctac
tgcattgttagtcatctacaggaggagaagaaatgtttccagtgtgattcgcgcagacca
tacaattctgtgtacaacaccatcagtcaccgtatcgagaatgtcatcaccagcttcagc
ccagaccacaagaagtgctggtggcagtctgagaatggcaagtctgatgtttatattcag
ttggaccttgaagcagagtttcacttcactcaccttatcatgacttttaagacgttccgt
cctgcagccatgttgattgagcgatcttcagattttggacgtacctggaaggtgtacaga
tactttgcccatgactgtgcatcagtctttcctggaatttctcagggaccactcggcaat
gttgatgacctcatctgtgagtcacgttattcagacatcgagccatccactgaaggagag
gtgatctttagagttctggaccctgctatccaaattgaagatccctacagtgctagcatt
caaaaccagctgaaaatcaccaacttgcgtgtgaactttacaaagctgcatacactggga
gataatctactggactcccgggtagagatcaaggagaagtactactacgccatatatgag
ctagtcatcaggggcaactgcttctgctatggccatgcttccgagtgcgcacccatcgat
gggataagggatgatatcgatcgcatggtgcatgggaggtgtgtgtgcaagcacaataca
aaaggattgaactgtgagcagtgtgatgatttccataatgatctgccctggaaaccagcc
gagggtcgcgacaccaatgcctgcaagaagtgcaactgtaatggccactccaacaaatgt
cactttgatatggcggtgtatctggccacggggaacgtcagtggaggtgtgtgtgacgac
tgtcttcacaacaccatgggccgcaactgtgaaacttgtaaacccttcttctaccaggac
ccagcaagcgatatccgagatcctcgcatctgtgtagcttgtaattgttacccggatggt
tctgtaaatcgtggtgggtgcgatgagcgtgatgatcccactctgggcatgattgctggt
cagtgtcgctgtaaggagaatgtggaaggccctcgctgtgacagatgcaagtctggcttc
tttggcctgagtgctaatgacccacaaggctgccagccatgtaggtgtgaccccagggga
acagtctctggcagtccccaatgcgaccctgtccgaggagactgcttctgcaagcgcatg
gtcactggacgcacctgcaaccagtgcctgccagagcactgggccttaagccatgatgcc
agtggctgcagagcatgtgaatgtgatgtaggtggagccgtagataaccagtgctcaatg
gaatcaggccagtgtcgctgccgcaatcacttgatgggccgccagtgcaaccaggtagag
actgggtatttcttcatggccctggactactatatatatgaggctgaacttgccaaactt
ggtcagggctgcactgttgaggaaaaggagtggcagtcaggtcgaccagcttcttggacc
ggcactgggtttgcacgagttcctgaaggaagcactctggagtttttcatcaacaacatt
ccttattccatggagtacgatgttctcatccgctatgagcctcagatgccacaagactgg
gacgaggtgcgtgtaaaagttatcaggcctggtccaattcccaccagcagcccatgtgga
aacacgatccctgcagatgatctactgactgtctccctgccctctggatccaggttcatg
gttctgccccagtctgtgtgtttggagagacgagtgagctatacactccgtctggagttt
atcagctatgcagacaaaaataccattcctggctttagcaatgccaacatcctgatagac
tctatcgccctgctccctcggtacaattccctggacatgtttgtagttggtgaccccgcc
tctatcctccggaagcaaatgtacgagcgttaccgctgccatgagagtgctaagagtgtg
tcccgcccagccatgagcgaagtatgcgctaaacttatctttagcatgtcagccatcatt
aacgacggagcactgccttgccaatgtgacccccagggttcactcagctctcagtgtgat
gtgcgtggaggtcagtgtccctgtaggcctaatgtaattggccagcgctgtgataggtgt
gctccaggaagctatggctttggacctgctggatgcaaagcatgtgactgtagtcaggag
ggctctcgcagtcaattctgtgatcagcgcacagggcagtgttcgtgtctcccaggagca
ttcagccagcgttgcgatagctgccaggcaggacactggggctttcccagctgcaggcca
tgtcagtgtaacggacatacagaggaatgccaccaaagaactggtgtctgtctcaattgt
aggggccacacagctggggaccagtgtcaaaagtgtgctaatggatactatggaaaccca
gtgttgggttcaggaagcagatgtcagccatgcccttgtccagatggacctgagagtgga
cgtcactttgctgcctcctgttaccaagacaaccatagcagacaggtggtctgcaactgt
aaacagggctacacaggaattgttaagcgctcaggagggactgtcctcaagcgtgcgcgc
tgtgaggattgtgcccctggttactatggtaatccctctcagcccggtggccgctgccag
acatgtcgctgtagtaacaacatcgacctatcagatcctgagtcatgtgacaggcggact
ggggagtgtctcaaatgtctctacaacactgagggacctgagtgtgcggtgtgtaagagc
ggctactatggcgatgcttctcgtcgcaactgcaggaagtgcacttgcaacttcctgggc
acagagcgcagtcagtgtctttcccgagatgactgtctgtgccagcgtgccacaggacag
tgccagtgtctgcctcatgtcattggactcacctgtgatcactgtgcaccaaactactgg
aacctggctggtggccacggatgtgaaccctgcaattgtgaccccaacaatgcctacaca
tcagcctgcaacgagttcacaggccactgtcagtgtcgtgatggctttggtggaaagact
tgcagggactgccaggagaacttctggggtgatcctagaatcctctgcagagcttgtgac
tgtgactctcggggcattgagacttcgcagtgtgaccgtttaacaggtcactgcgcttgc
cggcagggtgtatcaggtgtccggtgtgatcagtgtgcccgtggtttctcaggcatgttt
cctgcttgccagccttgccatcaatgttttggcgactgggatcgcattgtccaagatcta
gctgcgaggactaaggcccttgtagcccgggctcaggagatccagactacaggcctgact
ggagcctatgagaagcattttaggcagctggaagagaagctggcacaagcacagggcatt
gtcaatgcccgtaatgccactgccgaagctgtgaccaacctaatgggcatgatagagtac
ctcaggtctcgcattggtgaggcaacagacaccctgacccagctggagggagacctaact
gcagtgcaagacagcaactatgaagccagcagtcagctgagctcattggagagagaggcc
aaagaactcaacctcagctctgagaggctcaacaaccagcttgacatcctaaaaaattca
aactttttgggtgcctacgatagcatccgtgcctcatacaacaagtcacatgacgcagag
cgacgcaccaaccagtccactaccgacatcccaagcaccgtaagccaatcagcagacacc
cgcaggaagacagagcgacgaatggcgatgaataaagatgacttcaatcgtaagaacgcc
gcagacaagcgagccctcactgacctgaataaaaaagtccagaatctggatataaagaag
atcaatgagaaggtatgcggagctccaggtgatgtcccatgttcagagagcccttgtggt
ggtgttgattgtcgggatgatgagcgcagacactgtggtgggttgaactgtaatggagct
gttgctgtggctgacaatgccctggagagatccaaacatgcagaaaaagagctcgttaaa
gccatgggagaagtggaggacctctttaagcaggtggcagatgccaaaataaaggctcag
gaggccaaggataaagcccaggctgctctgatgaaagccagcgataccaagaacaaagtg
gaacgatctaacgacgacttgcgtgacctcatcaaacagattcgtaccttcctcatgcaa
gagggagctgacccagacagcattgaggctgtggcaaatcaggttcttgagctgtccatt
ccagcctcaccccagcaaatcagacacctagctgatgagataaaagaccgtgtccgaagt
ctgtccaacgtcgatgctattcttgatcagactcaggaggatgttcgcaaagcagaacaa
ctgcttacaaaagccagaaatactaagaataaagcagacagagtgaagaacacagcagac
agtgtgaaacaggcactcgatgatgctcgtaaagctcaggcagctgctgagaaggctata
cagagagcaagggatgacattggcatgactgagaaccgattggctcagattcagtctgag
acatcagctagtgagaaggacctgaatgaggccaagaacaagctggggcatctgggacag
cagatagaagccttaaaggccaaacaggccaacaatagcatggttgcagctcgagctaag
gataccgccaccatggcacaaaacaaggctaatgcagcaaaacaggatctagatggtgaa
ctttcagataaataccgcagtgttcaagatctagttaacaggaaggcgagcgcagtacag
gatgccaagaacaaagcagagcgactaagagatgaagcaaagcagctgcttaaggatgcc
caagacaaactgcatagactggcagaacttgagaaagactatgaggagaatcagaagaca
ttgcaggccaaagccaggcagcttgatggcctggaggacaaaatgaagatgattctggat
gccatcaacaagcaaatccagatctataatacctgccagtaa
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