Ictalurus punctatus (channel catfish): 108276236
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Entry
108276236 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1
KO
K11981
E3 ubiquitin-protein ligase NRDP1 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108276236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108276236
04121 Ubiquitin system [BR:
ipu04121
]
108276236
03029 Mitochondrial biogenesis [BR:
ipu03029
]
108276236
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108276236
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108276236
Autophagy
Mitophagy
PINK1-Parkin associated proteins
108276236
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108276236
Mitochondrial biogenesis [BR:
ipu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
108276236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_interact
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_6
zf-rbx1
zf-Nse
zf-C3HC4_4
zf-C3HC4_3
zf-RING_UBOX
Sina_ZnF
zf-RING_5
U-box
zf-ANAPC11
zf-TRAF
LXG
zf-RING_10
DUF641
Sos7
zf-TRAF_2
SlyX
DUF4795
zf-RING_16
zinc_ribbon_16
ATG14
Motif
Other DBs
NCBI-GeneID:
108276236
NCBI-ProteinID:
XP_017343233
Ensembl:
ENSIPUG00000011715
UniProt:
W5UEZ0
LinkDB
All DBs
Position
15:complement(22583453..22605258)
Genome browser
AA seq
318 aa
AA seq
DB search
MGYDVTRFQGEVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFAQQQICPVDRTVV
TLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKRPVVCEEGC
GLEMPKDEVPNHNCIKHLRSVVQQQQTKIADLEKTAAEHKHQLAEQKRDIQLLKAYMRAI
RSANPNLQNLEESIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPL
SIVNELIENAHERNWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDM
ILEPGLVMIFAHGVEEIL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggggtacgacgtcaccaggttccagggggaagtagatgaggatctgctctgtcccatt
tgcagcggagtgctggaggagccagtgcaggccccacactgtgagcatgccttctgtaac
gcctgcatcacgcagtggtttgcgcagcagcagatctgcccggtggaccgcaccgtggtg
acgctggcacacctgcggccggtgccacgcatcatgcgcaacatgctgtccaagctgcag
atctcctgcgacaacgccggcttcggctgcactgcgacactgcgcctcgaccagctccag
tctcacctcaaagactgcgagcacaaccccaaacgacccgtcgtctgcgaggagggctgc
gggttggagatgcccaaagatgaggttccgaaccacaactgcatcaagcacttgcgcagt
gtcgtgcagcagcagcagaccaagatcgcagacttggagaaaaccgcagctgagcacaaa
caccagctggcggagcagaaacgggacatccagctccttaaagcgtacatgagggcgatc
cgaagcgcaaaccccaacctgcagaatctggaggagagcatcgagtacaacgagatcctg
gagtgggtgaactcgctgcagcctgctcgcgtgacgcgctggggaggcatgatctcgacg
cccgacgccgtcctgcaggccgttatcaagcgctcgctcatcgacagcgggtgtcccctc
tccatcgtcaacgagctcatcgagaacgcccacgagcgcaactggcctcagggcctggcc
acgctagagacgcgccaaatgaaccggcgctactacgagaactatgtggccaaacgcatc
ccgggcaaacaggccgtggtggtgatggcgtgcgagaaccagcacatgggcgaggacatg
atcctggagccgggattagtcatgatcttcgctcacggagtggaggaaatcttatag
DBGET
integrated database retrieval system
