Ictalurus punctatus (channel catfish): 108276566
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Entry
108276566 CDS
T04658
Symbol
frem2a
Name
(RefSeq) FRAS1-related extracellular matrix protein 2a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108276566 (frem2a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ipu04091
]
108276566 (frem2a)
Lectins [BR:
ipu04091
]
C-Type lectins
Lecticans
108276566 (frem2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
Motif
Other DBs
NCBI-GeneID:
108276566
NCBI-ProteinID:
XP_017343831
Ensembl:
ENSIPUG00000011125
UniProt:
A0A2D0SMW1
LinkDB
All DBs
Position
16:complement(11186977..11273096)
Genome browser
AA seq
3105 aa
AA seq
DB search
MMELCLWLILLSPVAGSYGRQASGHGLSYAHRAELSEDSILVANNRIRVPFGRSVFIDPI
NDLVIEVQPGDRCSLIVLDNDPLSQRPGHLSPKKFPCEFGPNDVKYSHLGSRSPAEDRVR
LQLRYDTQTETIIIPFMLEIEVLFTQLEIVTKNMPLSVDKLHGISNSIDRRILEFAYDRN
SEQCEVTSLAASSALPRYCEVTDKSNLEKMMDCDAFLRADIRYKHTSVHKSPNRDYIPMV
VELRNKENNLLKQEFFHIMIRIREGLQNNPPKPSFVAMMMMEIDQFVMTALTPDMLAAED
TESDPDDLIFNITTPFSFEEGYIVSTDDRNLPITSFYQRDIKDLKIAYKPPSMDSDTERI
FQIEFEVLDPDGGVSEPFAFMIVIKPMNTLAPVVTKNTGQLLYEGQSRPLFTQNNLEISD
EDNLDSVRLTVVNGLRHGDLTILGSSMNYFTPADLQVGIVVYQHDGSDTYSDNIIFRMTD
GKNEVEFLFPITIVPTDDEPPIINANTGLVVFKNQMIPILPLMLGAADIDSEDSTIKFTI
EPPLSTIGEVLLRQSEAPEDPSSWKFNTEDGLYEKAVTEWLQKDITDGKLFYRHTGPHIT
ETITDQFIFKAQDDADPPNQSDEKTFSIRILPIDDVPPILFPGTSLQMTVHEYQMTTFHK
NVLHYTDLDSDDRDLKYTITQPPTDTDESHPVRFGSVVLTEHPDTEVREFTQAQVNHHKI
SYSPPDIELGITAHVAQFSFIVEDTAGNSVIGIFTILVQPVNNKPPEITNTGFTVFERGM
HILTNAELDTTDLDTDSKQISFTLSQSPQHGQVQLNFADFIKGNAFSLADISEGRISYVH
NGDETISDAFKLDVSDGVHIVPITVRIAVTPIDDEMPTLTLPVGTLGSHLSVLENGATEI
TVSVIQGKDEDTDDLRLTFIVEDAPAYGEILVNGIPSNMFTQADIINGLVTYKHTSGEIG
LSSKHDNFNLTLTDMSDEWAVGGNKITGVSVHVTILPVDNEAPVVKVVPTFNVTEGDRNI
IGEHQIIVEDADTLIEDILCTIIAQPNSGYMENISPAPGSEKSMSGIAISAFSIRDVHDG
HIRYAQSIHKGVEPVEDRFTFRCSDGVSFSERHFFPIVIIPTNDEKPEMFIREFVVMEGM
NVIIDAPILNGVDADIPVEDLTFIISKPPKHGFILDQLITGSFPVTNFTLEQIKDASSII
YEHDDSETTEDKFNVILTDGKHNVEGTVMIMIIAVDDETPRLAINDGLEIEVGETKEINN
KILKATDLDSEDSTLTFIIRYGPGQGILKKKTDHGPFENITVGMNFTQMELDQGHVFYTH
NGQEGVRDLIKFDVTDGSNPLIDRFFYITVSNIDRVFPEVVSKGVSLKEGGSVMLATDLL
STSDLNSPDENLVFTITRAPVRGHLESTDTPGMPIVSFTQLQLAGSKIYYIHTSDDEIKM
DSFEFEVTDGYNPVFRTFRVSVVDVDNKKPVLTVHELLVSEGHSKLITPFELTVEDQDTA
EEFLKFTVTQLPIHGKLLFNNSRSITSFTKQDLNENLISYKHDGTETYQDSFSFTVTDGT
HSDFYVFPDTVFETRRPQVMKITISLIDNGVPQIVVNKGVQTLKVLPTTHLGYPITSKVL
KAEDRDSSPETLVFHITTQPEHGYLINLQKGNDSINRFTQVDIDDLNICYVLKNKNNGTS
DTFIFYVEDNGGHKLKEQQFHLDWSWISLQKQNYMVDEQARVLEVVLRRRGYLGETSFVA
IGTVDGSAEKEKDFQGKFQKQVQFNPGQSTATWKIKILSDGKYEQSETFNIILSEPVMAA
LESPAVATVEIVDPEDESTVFIPQARLVVEEDIGELLVPLHRTGDVSEELMVLCYTLQGS
ATGTAPSTVLSFSDYISRPEGQTSILRFEKGETEKLCRVVIIDDSLYEPKESFNVSLSVV
LGGRLGSEYPSTCISILPDLDDAPLFNFGYAEYHVDESQGHIDVRVWRTGTDLSKAATVT
VRSRKTDPMSAEAGVDYVGISKNLDFAPGVNMQTIRVIILDDLGQPLLEGTEKFELDLHL
PSNAILGELTKATILINDSISDLPKMQFKHPLLTGEEHDRHLTAVVQRSGDITHQSTVRC
YTRQGSAQVVSDFEERPNTDASIITFLPGDTEKPCMLTLVDDSVYEDEEEMRLVLGSATS
DSPYGATIGTKNETLIKIKDSADKPIIKFAETKLSVNEPKESGKISIVRIYVRRVGDSSK
VSVVRIHTKDGSAVSGEDYHPISQDVEFMEGETEHFVEVEVLFDGAREMREAFTVHLKPD
ENMVAEIQMSKAIVYIEETNSMADVTFPSLPHVVSLLHYDDVRRTIHNAHPPAGYPVVCV
TACNPKHPEYEKTSSICASEHISDTLTHYRWLVSAPTGPDGITSPMREVDIETFFTSSKI
ITLDSIYFQAGSRVQCAARAVNSNGDEGLELSSPIISISMKEGMCHPRKMGTVGAEPFSA
KLHYTGAEDPEHANLIKLSVTIPHTDGMLPVLSTRALSNFELTLSPDGSRVGSHRCSNLL
DFDEVSTRHGFLTKATKSAEQVEESSPYQFNSTMRGLNTLHFYRNLNLEACLWEFVSYYD
MSELLTDCGGSIGTDGQVLNLVQSYVTLRVPLQVSYVFHSPVGTSGWQHFDLQSELRLTF
VYDTAILWRDGIGSPPQAELQGALYPASMRINDMGRLVVNFRTKAHFRGLFVALHHASSL
TSVVISTAHPGLTFNLSLVRTEPTYSQPVQQWTFTSDFAVRDYSGTYTVKLIPCTTALNI
EYSVPAVCNPRESVTFDLDIRLQQVSDPVAVEFNLNTQMFLLSKRSVWLSDGSMGFGQES
DAAFSEGDTIYGRVMVDPVQNLGDSFHCNIEKVYLCTGADGYVPKYNPTKFEFGCLADSP
SLLYRFKIIDKAQPETQALSFGDMNFNAVLAVDDPSALLLVKQPGSDGFRLDSTPLFQVA
AGREWYIHTIYNVHSRDNANRGIGKRSVEYHSFVSHNTRARRSNQDAPAIAEMISAEHNR
GTNIMHIALEHQQTVQADEVSAEGLVQHEIGNRGSEEEAVMATGVSVGLLFFSLIVAMLV
LLLRSQRRPEKDVRTRSEKKGLTVSTSMQPVILRSGFEGSDGSEV
NT seq
9318 nt
NT seq
+upstream
nt +downstream
nt
atgatggaactctgtctgtggcttattctcttgtctccagtagcaggtagttatggacgc
caggctagcggtcacggactgtcgtacgcgcacagagcagagctctccgaggactccata
cttgtagcgaacaacaggatacgcgtgcccttcggcaggtcggttttcattgatccgatc
aacgatttggtgattgaagtgcagcctggagacaggtgcagcttaatagtgttggataat
gatccgctgtcccaaagaccggggcatctttctcccaaaaagttcccgtgtgaattcgga
cctaacgatgtgaaatactcgcatttgggctccaggagccccgccgaggatagagtgaga
ctgcaactcaggtacgatactcaaactgaaaccatcatcataccgttcatgctggagatt
gaggtccttttcacacagttggagatagttactaaaaatatgcctctatctgtagataaa
ctccatggcattagcaattcaattgacagaagaatactggaatttgcatatgatagaaac
tctgagcagtgtgaggtcacatcattggctgctagcagtgcactgcctagatattgtgaa
gtcactgataagagtaatttagagaaaatgatggactgtgatgcttttctcagagcagat
atccgctacaagcatacttctgttcacaagtccccaaacagagattatattccaatggtc
gtggagctgagaaacaaagaaaataatttactgaagcaagagttctttcatatcatgata
cgcataagagaaggactgcaaaacaaccctcctaaacccagctttgtggccatgatgatg
atggaaattgatcagtttgtcatgaccgctttaactcctgacatgttagctgcagaggac
actgaatctgatcctgatgatcttattttcaacatcaccaccccgttctcttttgaggaa
ggttatattgtgagtactgatgatagaaatttaccaataacatctttttatcagcgagat
ataaaggatctgaagatagcatacaagcccccatctatggactcggacacggagagaatc
tttcaaattgagtttgaagttttggacccagatggtggagtttcagaaccttttgctttt
atgattgttataaagcccatgaacacactagcaccagtggtgactaaaaacacagggcag
cttctatatgagggtcagtccaggcctctgttcactcagaacaatttagagatcagtgat
gaagacaatctggacagtgtaaggttaactgttgtgaatggtctccgtcatggtgatctc
accattcttggctccagcatgaattatttcacaccagctgatctgcaagtcggtattgtt
gtatatcagcatgatggcagtgacacatacagtgataatataattttcagaatgacagat
ggcaagaatgaagtggagtttttgtttcctattacaattgttccaactgatgatgaaccc
cccattataaatgccaacacaggattggtggtatttaaaaaccaaatgattcccattttg
cccctaatgcttggtgctgcagatattgactctgaggattccaccatcaagttcaccatt
gaacctccactctcaactattggtgaagtgctactcaggcagtctgaggcaccagaggat
ccatcctcatggaaattcaatacagaagatgggttatatgagaaagctgtgacggagtgg
ctacagaaagacattacagatgggaagcttttctatagacacacagggcctcacatcacc
gagacgatcactgatcagtttatctttaaagctcaagatgatgctgatcctccaaaccag
tcagatgagaagacattctccattaggattctccctattgatgatgttccgcctatactt
tttccaggtacgtctttacagatgacagtccatgagtatcaaatgactactttccacaag
aatgtccttcattacactgatttggattctgatgacagagatctgaaatacacaataacc
cagccaccaactgacacagatgaaagccatccagtcagatttggttcagtagttttaaca
gagcaccctgacactgaggtaagagagttcactcaagcacaagtgaaccatcataagatt
tcctacagcccaccagacatagagctcggcatcacagcccatgttgcacagttcagtttc
atagttgaagacactgctggaaacagtgtaataggaattttcaccatactggtgcaacct
gttaataacaagcccccagagataactaacacaggtttcacagtctttgagcgaggcatg
catatacttacaaatgctgagcttgatactactgaccttgatacagatagtaaacagatt
tcctttactttaagtcagagtccacaacatggtcaggtccagcttaactttgctgatttt
attaaagggaatgcttttagcctagcagatatctcagagggcagaatttcttatgtccac
aatggggatgagacaatcagtgatgcttttaaactggatgtcagtgatggtgtccatatt
gtaccaattacagtaagaatagcagtgacaccaattgatgatgaaatgccaactctgact
ctcccagtgggtactcttggatctcacctgtctgtgctggaaaatggtgctactgaaatc
acagttagtgtaatccaggggaaggatgaagacacagatgacctcaggttgacctttatt
gttgaggatgccccagcatatggggagattctggtgaatggaataccttccaacatgttc
acccaagctgatataatcaacggtctggtgacatataagcatacaagtggtgagattggg
ctttcctcaaaacatgataattttaacttaacccttactgacatgtctgatgagtgggct
gtcggaggaaataaaatcactggagtatctgttcatgttactattctcccagtggataac
gaggccccagtggtaaaagtggttcctacatttaatgtcactgagggagacagaaacata
attggagaacaccaaataattgttgaggatgcagacacactaattgaagatatcttgtgt
actatcattgcccaaccaaattcaggttatatggagaacatctctccagcaccaggttcg
gagaaatctatgtctggcatagctattagtgctttcagtattagagatgtccatgatggc
catatccgctatgcccaaagcatacataaaggagttgaaccagtagaggaccgattcaca
ttcaggtgctccgatggtgttagcttctcagagagacattttttcccaattgtaattatc
ccaaccaatgatgagaagccagaaatgtttattagagagtttgtggtgatggagggcatg
aacgttatcattgacgcccccatcctgaatggagttgatgctgatattcctgttgaagat
ttgacttttatcatttcaaaaccacccaaacatggttttattcttgaccagctgatcact
ggctctttcccagttactaactttactttggagcaaatcaaagacgcttctagcattatt
tatgagcatgatgattctgagaccacagaagacaaatttaatgttattctcacagatgga
aaacataatgtagaaggtactgttatgattatgattattgctgttgatgatgagactcca
agattggctattaatgatggtttggaaattgaagttggagagacaaaagaaataaataat
aagattctgaaggcaactgatttagactcagaagatagcacacttacatttataattcgg
tatggtccaggtcagggaattctaaagaagaaaacagaccatgggccttttgagaacatc
acagttgggatgaatttcacacagatggaactggaccagggtcatgttttctatacacat
aatgggcaggaaggtgttcgtgaccttataaagtttgatgtaacagatggtagtaatcca
ctaattgacagatttttctacatcactgtgagcaacattgacagggtgtttcctgaagtt
gttagcaaaggagtatccctaaaagaaggaggaagtgtgatgcttgccactgacctactc
agtacgagtgatctcaacagcccagatgaaaacctggtcttcaccatcaccagagcccct
gtgaggggacatctggaaagcactgacactcccggaatgcccatagtgtccttcactcaa
cttcagttggctggaagtaaaatctactacatccacacttcagatgatgaaatcaagatg
gacagttttgagtttgaagtcactgatggatataaccctgtttttcgcactttccgtgta
tcagtagttgacgttgacaacaaaaaacctgtcctgacggtacatgagctcctggtgtcc
gaaggtcattctaaacttatcacaccgtttgagttgactgtagaggatcaggatacagca
gaggaattcctgaagttcactgttactcagttgcctatccacggtaaactgctctttaac
aacagccgttcaattacctccttcacaaagcaagatctgaatgaaaacctaatcagttac
aaacatgatggcacagagacatatcaggatagcttctcttttactgtcactgatggaaca
cactctgatttctatgtatttcctgacaccgtgtttgaaactcgcaggcctcaagtcatg
aaaatcactatttcattgatagacaatggtgtaccacaaattgtggtgaacaaaggtgtt
caaacattgaaggtcttgccaacgacgcacctaggttatcctataaccagcaaagtgcta
aaggcagaagatagagacagcagcccagagactctggtttttcacatcaccacacaacca
gagcatggctacttgatcaaccttcagaaggggaatgattccatcaatagatttactcaa
gtggacattgatgacctgaatatctgctatgtgctgaaaaataagaacaatggcaccagt
gacacctttattttctatgttgaagacaatggaggacataaactgaaggagcagcagttc
cacctggactggtcctggatctctttacagaaacagaactacatggtggacgagcaggcc
agagtgctggaggttgtgctcagacgtagaggatatctgggggaaacatcttttgtagca
attggtactgtggatggcagtgctgagaaggagaaggactttcagggaaaatttcagaaa
caggtgcagtttaatccaggccagagcacagctacatggaaaatcaaaatcctttctgat
gggaagtatgagcagtctgagaccttcaacatcattctgtctgagccagtcatggcagca
ttggagtcaccagcagtggccacagtggagatcgtggatccagaagatgagtctacagtc
ttcattccccaggcaagacttgttgtcgaggaggacattggagagctgctggtcccgtta
cacagaacaggagatgtcagtgaggagctgatggtgctctgctacaccctacaaggctcg
gctacaggtacagcacccagcactgttctttctttctctgactacatctcccgaccggag
ggacagactagcattctgcgttttgaaaaaggagagacagagaagctttgccgcgtggtg
atcattgacgactcactgtacgagcctaaggaaagctttaacgtctccctcagcgtggtg
ttaggtggtcgcctcggctctgaataccccagcacatgcatcagcatcctgccagacctg
gatgatgctcccttgttcaacttcggttatgcagagtaccacgtggacgagagccaaggt
cacattgatgtgcgagtgtggaggacaggaacagacctctccaaagcagccactgtcact
gtcagatctcgtaaaacggatccaatgtcagctgaagctggagtggactacgtgggtatc
agtaagaatttggactttgccccgggggtgaacatgcaaaccatccgggtcatcattctg
gatgatctcggccagccgctacttgagggcactgagaaattcgagctcgacctacacttg
ccctcgaatgcgattctgggagagctgacaaaagccaccatcttaattaacgattccatc
tcagacctgccaaagatgcagtttaaacatcctcttctgactggagaagagcacgataga
catctcactgctgtggtccagcgcagtggagatatcacacaccaatccactgtgcgttgc
tacacccgccagggatctgctcaggtggtcagtgactttgaagagagacccaacactgat
gcatctatcatcaccttcttaccaggtgatacagagaagccgtgcatgttaactctggtg
gatgactcagtgtatgaagatgaggaggagatgaggcttgtgctcgggagtgctacgagt
gattccccatatggagcgacaataggcacaaagaacgaaacactcatcaagattaaagac
agtgctgacaagccaattatcaagtttgctgagacaaagttgagcgtgaacgagccaaaa
gagtcagggaagataagcattgtgcggatctatgtgcgtcgagtgggagattcctctaaa
gtgtctgtggtgagaatacacactaaagacggttcagctgtgtcgggagaagactatcac
cccatctctcaggatgttgaatttatggaaggtgaaacagaacattttgtggaggtggag
gtcctttttgatggggccagggaaatgagagaagccttcactgtccatctcaaacctgat
gagaacatggtggctgaaatccagatgtccaaggccatagtgtacattgaagagaccaac
agcatggctgacgtcacgttcccctcactgccgcatgttgtgtctctgctgcactatgat
gatgtcagaaggactatacacaatgctcacccaccagccggctatccagtggtctgtgtg
acggcatgcaaccccaagcacccagaatatgagaaaacaagctcgatatgtgcaagtgag
cacatcagtgacacgctaacacactatcgctggcttgtcagtgcccccactgggccagac
ggcatcaccagccctatgagggaagtagatattgaaacctttttcacctcctccaagata
atcacgctggactccatctacttccaagccggctcacgggttcagtgcgccgcccgtgct
gttaactccaacggggatgaaggcctggagctcagcagccccatcatatccataagcatg
aaagagggaatgtgtcaccctcgtaaaatgggcacagtaggtgctgagcctttctctgcc
aagctccactacaccggcgctgaggacccagaacatgccaacctcatcaagcttagtgtc
accatacctcacacagatggcatgctccctgtgctctctactcgtgctctgtccaacttc
gagctgactctgagtccggacggcagccgtgttgggagccaccgctgctccaacctcctg
gactttgacgaggtttccacacgccacggcttcctcacaaaggctaccaagagtgcggaa
caagtagaagaaagctctccctaccaattcaactctaccatgaggggcctgaacacgcta
cacttctacaggaacctcaacctggaggcctgtctgtgggagtttgtgagttattatgac
atgtctgaactgctcacagactgcggtgggagcatcgggactgatggacaggtgctaaat
ctggtgcagtcctatgtgactctgcgtgtccccctccaagtctcctatgtgtttcactca
cctgtgggcaccagcggctggcagcactttgacctacagtctgagctgcggcttactttt
gtttacgacactgccatcttgtggagggatggcatcggcagccctcctcaagctgaactg
caaggagctctttacccagccagcatgcggattaatgatatgggacgtctggtggtcaac
ttccgcaccaaggcacactttcgggggctgtttgtggccttgcatcatgcatcttctttg
acctcagtggtcataagtacagcccacccagggttaacctttaacctttccttggtcaga
acggaacccacctacagccagcctgtgcagcagtggacattcacttcagactttgctgtg
cgtgattactctggtacctacaccgtgaagctaatcccctgcaccacagccctaaacatt
gagtactctgttcctgcagtctgcaaccccagagagtcggttacatttgacctggacatc
agattgcagcaggtgagtgatcctgttgctgtggagttcaatctgaatacacagatgttc
ctgctgtcaaagagatcagtgtggctctctgatggatctatgggctttggacaggagagt
gatgcagctttttcagagggtgatacaatctacgggcgagtgatggtggatccggtgcag
aacctgggggactcgtttcactgcaatattgagaaggtttacttgtgcactggagcagat
ggatatgtgcccaagtacaaccccactaagttcgagtttggctgcttggctgattctcct
tcactactatacagattcaaaattattgacaaagcacagccggagactcaggctctgagt
tttggtgatatgaacttcaacgctgtgctggcagtagacgacccatcagccctcttgcta
gtgaagcaacctggctcagacgggttcagactggactcaactcccttattccaggtggca
gcaggccgtgagtggtacatccacaccatttacaatgtgcactccagagacaatgcaaac
cgtggcatcggcaaaagaagtgtggagtaccattcgtttgtgtcgcacaacacccgtgct
aggcgctctaaccaggatgcacctgctatcgctgaaatgatcagtgctgaacacaatcga
ggcaccaacataatgcacatcgctctggagcaccagcagacagtgcaggctgatgaggtt
tccgctgaaggcctcgtccagcacgaaataggcaatcgtggcagtgaggaagaggcggtg
atggctacaggagtctcagttggtctgctgttcttcagcctcatcgtggcgatgcttgtt
ctattgcttcgatcgcagaggagaccagaaaaggatgtgagaacgagatcagagaagaag
ggactaacagtttctaccagcatgcagccggttatattgaggagtggttttgaaggcagc
gacggctctgaggtgtga
DBGET
integrated database retrieval system
