Ictalurus punctatus (channel catfish): 108276592
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Entry
108276592 CDS
T04658
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ipu00535
]
108276592
04091 Lectins [BR:
ipu04091
]
108276592
Proteoglycans [BR:
ipu00535
]
Cell surface proteoglycans
Others
108276592
Lectins [BR:
ipu04091
]
C-Type lectins
Others
108276592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Jag_N
7tm_3
Motif
Other DBs
NCBI-GeneID:
108276592
NCBI-ProteinID:
XP_017343868
Ensembl:
ENSIPUG00000021772
UniProt:
A0A2D0SMD5
LinkDB
All DBs
Position
16:complement(25588622..25608014)
Genome browser
AA seq
2368 aa
AA seq
DB search
MINRTESGASFYGDGFVRLKTVESSSKNTLHVRFRTSSGDGLLFLAAGETDFLWVALQAG
RIQVQVELGSGERTLRSEKAAPLNDLTWHAIELQHNGQNITLTVDKSSWSSLRMPGPDLE
LSVQDGLYVGGLENSDKLYLFNDISHMGFRGCLDEVLFNEHNLLSSLRPYSGYKMVHEVS
LGCSPQFSASVNDSISFFSSKAYMSLPMWEVPQEGVFECEFYTSAEDGLLLYSSAGKGDY
VALEIRHKRLVAVVRVDGSKTALSSITVVSEGWHSVRLYVAPRALQLTVGEEILNSSFGA
KSRALQLNGPLFLGGVDANTFSEVRRNGLLSVVSKHLSGGSFKGCLRNIRVNDQNMGLPN
AVVTKDVSVGCEPVKHVKPITTTNPETLQPETPQLDKTDSQTFLILKDLEVPEGGRAPLE
SKHIKLNLDFRKLGIRQSQIMFRIEEQPVHGQLRLDVDPDQLENAFSILALWHGQVMYVH
GGSEDPQDFFMFSVFTTSTNKEVPGYLKGSHLHRFNITVTPINDAPELSLPEGNLFILLE
NSKRHLSMDMLRATDPDSNYTELVFSLLGNLIANAGFLELADNPGKPVTSFSYSDLEGGK
VSFVHKGIKNSRMAIRVSDGEKVSNTVVLRIMAVTLEYKVVNNSGVDVIQGRSSHIGSKH
LAVQVNVAKQVMDIRYDVLDPPFYGELQRLHSSGEWKQTGTFTQKLLEKDRLRYLSTFHG
PQFKNVTDGFKCKISVGSASTGEVLVRVRVRWIQYKVTRSKMEVKDDRKVTLTPQEFRIV
SKNVKLSENDLHVCLLTLPRRGVLLFNDKPLKKNSTFSQRNITDQKVQYKLFEKPNKNLR
DMFSFQVFSEYSYSGRHDFRISIKPNVPSVVLRNHGLSLLEGESKIITKDNLFFETFGSG
AVRYTVVSSPQHGKLLRINNSRHNIAEFTNQDILEERVLYVHDDSETTRDAFTFWASASS
PNDVEGVFNISIQLVNDQKPVRVVDKVFHVARDSQRLLTSEDLRYHDPDSDYDDGQLLYT
RRGISVGELVSVNDTSHKLYRFHQRDLEEKRVLFVHSGANFGRFVLFVSDGKHYTSTLLE
VSAQEPYLKVANNTGLLVQKGQEVMLQSVNFSVTTNTDVRSDEDVLFEIFHPPSHGVLLC
EGVEADAFTQYDLKAGHLVYRHDDGRNLMDSFSLTATVNRLRLDVTVPVKVYLESHQKPP
QVIHNHSVVVEEGKHVQIHKTQLEVVHEDNTPDEIMYTMRTPPSHGFLMRSRVDGQDRHD
GTVETFSQWDINAGHIRYVQEKHGRTDDSFSLDVTNGIGTVSDLVVFVEIVPSFLPLEVS
NITLKEGSSTALTEDVIKVTGRHFTELHVQYHVIDGPRHGRIEHSRIPGVPIPSFTRVQV
EHAFISYVHDGSETIGDNFTLVANDTDVRKQSEPRVIHVTVTPVNDEAPVITINRILRVW
VDSVTEITSDDLSASDLDSAPENLEFIITPPSNGHLALKSAPSRPVLNFTQAHIHRRQLV
FLHRGALFGGFHFQVNDGVNFAPRQIFSIAARSLELSLERNRELKVFPGSSKVISVEDLF
IATNDYDDIHENRTVVYSVTSPPRLGRLIRPQDDSSTETKPISTFTQNMLKAGLVVYEHT
EPISWTATDYFIFTASSPPASFPPHTFNIRISYDNTSPEHGSVLLANTGAVVVEGSRIMI
DKSKLDASNLLGKLPEEERDSYEIWYRVTTLPRFGTIVVGERNLTREKPVFPQLILNKYG
ISYVHDDSETICDSFSFDVWLNPIGRPAQQPQEEDFMVSESFNITVTPVNDLPPLLKTQA
PSLLVVKGDTVALGPENLHVEDLDTLPEDIHYTVISKPNNGFLALEGRLNESTVTFTQAD
VNEGRVHFVQEGRPTSGIFYFSVTDGFHRPLYKLFNLEVHNVTVDVVNNTGLTLVQGRTT
GSLTLQHLAAVTNKKNATIKYYITTPPSHGRLVIKEDQITHFDQEELRLGRVLYQMADLS
SSQDSFEFTVVASESNLTNQVFNITVKPLIHLGKQVRIPDGIPVKIRKDVLDATELASIS
GSDPIFEIIIPPKYGKLVKVTVNLGGASESIESFTFRDVEQGRIAIQEHLNFLAVYGNTT
AVVHNKTAPALEDSFVFLLKAANVQPARGEFVFMVVPYDPMTGKHVVSAAPVYPTVHPAF
NRTSNVVSHVNRPAHMHPTKTPHWVPPKTKTRNRSGNHTRGKATVSNAPKTTSGRHNDPP
RNTPIRVESLPRPASDPLLIILPFLACLFLIIILVVLILVFRHRQEKRAQPSMLQDLPEN
SVEDIVSPSPYLGQPERSLTVPSVVVTPLLPRCPRSPVLEAVHNGAVVPAIVLPDSSMLV
CPWTPMDPDGTPQSSPGSPTLRQNQYWV
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaccgaactgagagcggagcctctttctacggagacggttttgtgcgtctgaaa
accgtggagtcgtccagtaaaaacaccctccacgtgcgatttcggacctccagcggagac
gggctgctcttcctggctgccggggagacagatttcctgtgggtggcgctacaggcagga
cgtattcaggtgcaggtcgaactcggatcaggggaacgcacccttcgctcagagaaagca
gctccgctgaacgaccttacctggcacgccattgaactccaacacaatggccagaatatc
accctgactgtcgacaaaagctcatggagcagtctgaggatgcctgggcctgacctggag
ctcagcgttcaggacggactttacgtcggcggtcttgagaattcggacaagctctacctt
ttcaacgatatatctcacatgggctttcgtggctgtctggatgaagtgctgtttaacgaa
cacaatttgctttcatccttaaggccttactctggttataaaatggtccacgaggtgtct
ttgggctgtagcccacagttttcagcctccgtgaatgactcgatcagtttcttcagttcc
aaagcgtacatgtctctgccgatgtgggaggttccgcaggaaggtgtatttgagtgtgag
ttttatacctcagctgaagatgggcttctcttgtacagctctgcagggaagggggactac
gtggctttggagatacgacacaagcgcctcgtcgctgtcgttagagtagatggtagtaag
acagctttaagctccataacagtcgtgagtgaaggttggcactcagtgaggctctatgta
gcacctagggctcttcagttaactgttggagaggagatcttgaactccagctttggagcc
aaatccagggctctccagcttaacggacccctcttcttgggcggggtggatgcaaacaca
ttttcagaagtacggagaaatggtttgctctctgtagtatcgaagcacctcagtggtggc
tcctttaaaggctgtcttagaaatatccgagtcaatgaccaaaacatgggcctgcccaat
gctgtggtgacaaaagacgtttctgtcggttgtgagcccgtgaaacacgtcaaacccatc
accacgacaaatccagagacgcttcaaccagaaactcctcaattagacaagacagactct
cagaccttcttaattctcaaagatctagaggtccccgagggtggacgagcaccactcgag
tccaagcacattaagttgaacctggatttccgcaagcttgggatccgtcaatcccagatc
atgttccgcatcgaggagcagccggtccacgggcagctgaggctagatgttgatcctgat
caactggaaaatgccttcagtattctggctctatggcatggtcaggtcatgtatgttcac
ggaggctcagaggatcctcaggacttcttcatgttttctgttttcaccaccagcaccaat
aaagaggtgcctggttatctgaaggggagccacttgcacaggtttaacatcactgtcacg
cctattaacgatgccccagaactcagcctcccagagggaaaccttttcattctcctagag
aactctaagcggcatttgagcatggacatgctaagagctactgaccctgatagcaactac
acagaactggtattctctctactcggtaatctaattgcaaacgctggattcctggaactt
gcggataatccaggaaagccagtgacctcgttctcctactcggacttggaagggggcaag
gtgagtttcgtccacaaaggcatcaagaactctaggatggccatcagagtgagcgatgga
gaaaaagtgagcaatacggtcgtgctgagaatcatggccgttaccttggagtacaaagtc
gtaaataactccggcgtggacgtgatccagggtcgatcttctcacatcggtagtaaacat
ttagctgtgcaagtgaacgtggccaagcaagtgatggatatccggtatgacgtactagac
ccgcctttctacggtgagctgcaacggctacattccagtggtgagtggaagcagactggt
acctttacgcagaaacttctagaaaaggatcggctccggtatcttagcaccttccatggt
ccccagttcaaaaatgtaaccgatggcttcaaatgcaaaatcagcgttggctcggcgtct
acaggcgaggttctcgttcgtgtaagggtccgatggattcagtacaaagtcaccaggagt
aaaatggaggtgaaagatgatcgtaaagtcacgttgacacctcaggaatttagaatagtc
tccaaaaacgtgaaactctctgagaacgatcttcacgtctgcttgttgactttaccgagg
agaggcgtcttgcttttcaacgacaagcccctaaaaaagaactctactttcagccagagg
aacatcactgatcaaaaagtgcagtataaactttttgaaaagccaaacaaaaacctgagg
gacatgttcagctttcaggtgttttcagaatactcctattctgggagacatgacttcagg
atcagcatcaagcccaatgttcccagcgtagttctgagaaaccacggactttccctcttg
gaaggggagagtaagatcataaccaaggacaatcttttcttcgagactttcggctccggg
gccgtacgttacaccgtcgtgagcagtcctcaacatgggaaactactccgaatcaacaac
tccagacacaatatagcggagttcacaaatcaggacattctggaggagcgcgtcttgtac
gttcatgatgatagtgaaacgacacgcgacgcgtttacgttctgggcttcggcatcgtct
ccgaacgacgtcgaaggcgttttcaacatctccatccagttagtgaacgaccaaaaacct
gtccgtgttgtcgataaagtctttcacgttgcacgggacagtcagaggctcctgacgtca
gaggatctccgttaccatgaccctgattcagactacgatgatgggcagctactgtatacc
agacggggaatctcggttggcgaactagtctcggtaaacgatacctcgcacaagctttat
cggttccatcaaagagatctggaggaaaagagagtgctgtttgtccacagtggcgcgaac
tttggacgctttgtactcttcgtatccgacgggaagcattatacgtcgacgctgctggaa
gtaagtgcccaggaaccttatttaaaggtagccaacaacactggcctactagtccaaaag
ggacaggaagtcatgttacaatcagtcaacttcagcgtcactaccaacaccgatgtccga
agtgacgaggacgtcctttttgagatatttcatcctccgagtcatggcgttctactctgt
gaaggcgtcgaggctgacgctttcacgcagtatgacttaaaagcgggtcatctagtctat
cgccatgacgacggcagaaaccttatggactcctttagcctcacggctacggtaaacagg
ctgcgcttagacgtgaccgtgccggtgaaggtgtacctcgagagccatcagaaacctccg
caagtcatccacaaccactctgtcgtcgtggaagaaggaaaacacgttcaaatccacaaa
acgcagctcgaggtagttcacgaggataacacaccagatgagatcatgtacaccatgaga
acacctccatcgcacggcttcctgatgcgctctcgcgtggacggacaggaccgtcacgat
gggaccgtcgaaacgttctcacagtgggacattaacgcgggtcacatccggtacgtccag
gagaaacacggacgcaccgacgactctttctcactggacgtcactaacgggatcgggacc
gtcagcgatctggtggtgttcgtagaaatcgttccttccttcctaccgctcgaagtgtcc
aatataaccttgaaagaaggatcttcgacagctctaaccgaggacgtaatcaaggtcacg
ggccgacactttacagaacttcacgtccagtaccacgtgatcgacggtccacgtcacggc
cgtatagagcactccaggatccccggggttcccatcccatctttcaccagggtgcaggtc
gaacacgcgttcatatcgtacgtccatgatggcagtgagacgataggagataatttcacg
ctggtggcgaacgacacggacgtccgtaagcagagcgagcctcgtgtcatacacgtgacc
gtcacgcctgtaaacgacgaggccccggttataaccatcaacaggatcctgagggtatgg
gtggactccgttaccgaaatcaccagcgatgacctcagtgccagtgacctcgactctgcc
cctgagaacctggagtttatcatcactcccccaagtaacggacaccttgctttgaagagc
gccccctccaggccagtcctgaacttcacccaggctcacatccaccgccgtcagctggtg
ttcctacacaggggtgccttgtttggcggatttcatttccaggtgaacgacggagtcaat
tttgcaccgaggcaaattttcagcatcgccgcccgatctctggagctcagcctggagagg
aaccgtgagctcaaagtcttcccaggttcctcaaaagtaatttccgtagaagatttgttc
attgccactaatgactatgatgacattcacgagaatcgcaccgtcgtctattccgttacc
tcacctccgagactgggcaggctgatcaggccccaggacgacagttccacagagacgaag
ccgatatccacgttcactcaaaacatgttaaaggccggtttggtcgtatacgaacacact
gagccaatatcatggacagcgacagactacttcatctttactgcatcgtctcctcctgct
tccttcccacctcacacgtttaacatccgcatctcctacgataacacaagtccggaacac
gggagcgtcctactcgccaacacaggtgctgtagtggtggaaggcagtcggattatgatt
gataagtcgaagttggatgcctcgaatcttttgggaaagctacctgaagaagaacgagac
tcctacgagatctggtaccgggtcaccacgctgccacgcttcgggacgatcgtcgtaggt
gaacgtaacctgacccgtgagaaacccgtcttcccccagctcatcctcaacaaatatggc
atcagttacgtgcacgatgactcagagaccatctgtgacagtttcagttttgacgtgtgg
ttaaatcctatagggaggcctgctcagcaaccccaagaggaagactttatggtctcagag
tcttttaatatcactgtaacgcctgtgaacgatctgcctcctttactcaaaactcaagcc
ccaagtctcttggtggtcaaaggagacactgtagccttaggtcctgaaaaccttcacgtg
gaagacctggacactttacccgaggacatccactacactgtgatcagcaagccgaacaac
ggcttcctggccctggaaggtaggctaaacgaatctactgtcacgtttacccaggctgat
gtgaacgagggaagggtgcactttgttcaagaagggcgtcccacctcaggaatattctac
ttcagtgtaaccgatggcttccatcgtccactctacaagctcttcaaccttgaagttcac
aacgtcacagtcgacgttgtaaataatacgggattgactctggtgcaagggcggactaca
gggagcctgacacttcagcacttggctgcggtgaccaacaagaaaaacgctaccataaag
tattacattacaacaccaccgagtcatggtaggctcgtgattaaggaagaccagatcaca
cactttgaccaggaggaacttcggctggggagggttttgtatcaaatggcagacttgtcc
tcgtctcaagacagcttcgagttcactgtcgtcgcctctgagagcaacctgaccaatcag
gtgttcaatatcacagtgaagccgcttatccaccttggaaaacaagtccggatccctgat
ggtattcccgttaaaataagaaaggatgttttagacgccaccgagctggcatccatcagt
ggcagcgacccgatctttgaaattattattcctccaaaatacggcaagttagtaaaggta
acggtgaacctaggtggtgcatcagagtctatagaatcctttacctttagggatgtcgaa
caaggcagaattgccatacaggagcaccttaactttctagctgtatacggtaacacaaca
gctgttgtgcataacaaaaccgcacctgcacttgaagactcgtttgtgtttcttttaaaa
gcagcaaacgttcagcctgcccgaggagagtttgttttcatggttgtaccatacgaccca
atgacaggaaagcatgttgtttcagcagctccagtgtatccaaccgtacatcctgctttt
aacagaacaagcaatgttgtttcacacgtgaacaggccagcacacatgcacccaaccaaa
acaccacattgggtacctccgaagaccaagacacgaaaccgttcggggaaccacacacga
ggaaaagccacagtttctaatgcacccaagaccacatcaggcagacacaacgatcctccc
aggaacacaccgatcagggtagagtctttgccaagacctgcatctgatcctttgcttatt
attctacccttcctggcctgcctgtttcttataatcatcctagttgttttaatcctggtt
ttcaggcacaggcaagagaagcgggctcagccttccatgctccaagacctgccagagaac
tctgtcgaggacattgtatctccaagcccttacctgggacagcctgagagaagtctaacc
gttccctctgttgtagtgaccccacttttgcctaggtgtcctagaagccctgttttagag
gcagtgcataatggggcagtggttccagcaatagtactccctgactcttcaatgcttgtc
tgtccatggactcccatggatcctgacggaacaccgcagtcctcgccgggttcaccgact
ctgagacaaaatcagtactgggtttga
DBGET
integrated database retrieval system
