Ictalurus punctatus (channel catfish): 108276614
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Entry
108276614 CDS
T04658
Symbol
trpc4a
Name
(RefSeq) short transient receptor potential channel 4a
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108276614 (trpc4a)
Ion channels [BR:
ipu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108276614 (trpc4a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank_4
Ank
Ank_3
PKD_channel
YVC1_C
Egg_lysin
Motif
Other DBs
NCBI-GeneID:
108276614
NCBI-ProteinID:
XP_017343908
Ensembl:
ENSIPUG00000011211
UniProt:
A0A2D0SMH4
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Position
16:11384290..11407164
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AA seq
941 aa
AA seq
DB search
MSQLYYRRTGNSSYRDRIPLRIVRAESELSPLEKAYLNAVEKGDYASVKQALEEAEIYFK
ININCIDPLGRTALLIGIENENLEIIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGGMQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQKGVSVPQPHEVRCNCVE
CVSGSDVDSLRHSRSRLNIYRALSSPSLIALSSEDPFLTAFLLSWELQELSKVENEFKAE
YEELSHQCKQFAKDLLDQTRSSRELEIILNYRDDINPLEDEGNNNDLARLKLAIKYHQKE
FVAQPNCQQLLASRWYDEFPGWRRRHWAGKFVTCIFIGLLFPLFSIFYLIAPKSHYGLFI
RKPFIKFICHTASYLTFLFLLLLASQHVVTTDSGRQGPAPTTVEWMILPWVLGFIWAEIK
QMWDGGFQDYVHDWWNLMDFVMNALYLATISLKIVAYTKYSDVKPRNDWEMWHPTLVAEA
LFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETEASNKTGNCKGIRCVQQNNAFSTLFETLQSLFWSIFGLISLYVTNVDPEHQFTEFV
GATMFGTYNIISLVVLLNMLIAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGGTLPPP
FNIIPSPKSAWYLIMWIKKHICKRTRSERTATFGSISRRAARNVHINHQYQEVLRNLVKR
YVAAMIRDAKTEEGLTEENFKELKQDISSFRYEVLGMMKGNKPSKGSTGASNMAYCEHPM
KCSTAPTGESLKSKLKLFNVTTSILQQNSKANTKNTEHYLANGSIRTPSETTSSNRTSDF
SGLYHQIWHRGTNDPGRIYSVCEEVGESDTEELGEKTKNDKPSESLIMKKANENEMGESS
NETKEVHKMIEERNRFSDIPCICDNDVNDESTENYEEISRL
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctgtattaccgccgtactggtaactcctcatatcgagaccgcatccctctt
cggattgtgcgggccgaatcagaattatcccccctagagaaggcctacctgaatgctgta
gagaagggtgactatgccagtgtgaagcaagccctggaggaggctgagatctacttcaaa
atcaacatcaactgcattgacccacttggccgcacagccctacttatcggcattgagaat
gagaacctggagatcatcgaactcctgctcagttttaatgtatacgtgggtgacgcgctg
ctccatgccatacgcaaagaggtggtgggtgctgtagagctactgctcaaccacaagaag
cccagtgggggcatgcaggtgcctcctattctgctggacaaacagttttctgacttcacc
cctgacataacgcccattattttggctgctcacaccaacaattatgaaatcatcaagctt
ctggtgcaaaagggcgtttcggtgccccagccacacgaggtgcgctgcaattgtgtggag
tgtgtatctggctcagatgtggatagcttgcggcactcacgctcccgtctcaacatctat
cgcgcactgtccagcccatcgttgatcgccctgtccagcgaagacccattcctcacggct
ttcctcctcagctgggagctgcaggagctcagcaaggtggagaatgagttcaaggctgaa
tatgaggagttgtcgcaccagtgcaaacaattcgccaaggacctgctggatcagacacgc
agctcacgagagcttgagatcatcctcaattacagagatgacataaatcctctggaggat
gagggcaacaacaatgatcttgccaggctcaaactggccatcaagtaccatcagaaggag
tttgtagcacagccaaactgtcagcagcttctagcatcccgctggtatgatgagtttcca
ggctggaggagacgccactgggccggcaagtttgtcacatgcattttcatcggcctcctg
ttccctctcttctccatcttctatctgatagcccctaagagtcactatggcctttttatc
cgcaagcccttcatcaagttcatctgccacactgcctcttacctgaccttcctcttcctc
cttcttctggcctcccagcatgtggtcaccacagactcgggtcggcagggtccagctccc
accactgtggaatggatgatactgccttgggtgctcggatttatatgggctgagatcaaa
cagatgtgggatggaggctttcaagattatgtccatgattggtggaaccttatggatttt
gtcatgaatgctctctatctagccactatctctctaaagattgtagcttacacaaagtac
agtgacgtcaaacccaggaatgattgggagatgtggcatcctaccctggtggcagaggca
ctattcgccattgccaacatctttagttcgctgcgcttgatctcgctcttcacagctaac
tcccacctgggtcctctgcaaatctctctgggccgcatgctactggacatccttaaattc
ctatttatctactgccttgtacttctggcttttgcgaatggcctcaaccagctatatttt
tattatgaaaccgaggcttcaaacaagacagggaactgcaagggtattcgctgtgtacag
cagaataatgcattctccacgttatttgaaaccctccagtctttgttctggtccatattt
ggcctcatcagtctgtatgtgaccaacgttgacccagaacaccagttcacagagtttgtt
ggagccaccatgtttggaacctataacattatttctctggtagtgcttctcaacatgcta
attgccatgatgaacaactcgtatcaacatattgctgatcatgctgacattgagtggaag
tttgctcgaactaagctatggatgagctactttgaagagggaggtactttgcctcctcca
tttaatataattcccagccctaagtctgcatggtacctgatcatgtggatcaagaagcac
atctgcaagaggacaagatcagagagaactgcgacttttgggtcaattagtaggagagct
gcaaggaatgtccacatcaatcaccagtatcaggaggtgctgcgaaacttggtgaagcgg
tacgtggctgcaatgatcagagatgccaagacagaagaaggcctaacagaagagaacttc
aaggagctaaaacaggacatttctagtttccgatatgaagtgttaggaatgatgaaagga
aacaaaccttccaaaggaagtacaggagcctcaaacatggcctattgtgaacatcctatg
aagtgttcaacagctcctactggagaatcactgaagagcaagcttaaactttttaatgtc
actacctctattcttcaacaaaattcaaaagcaaatacaaagaatacagaacactacctt
gctaatgggtccatccgtacaccatcagaaaccacatcaagcaacaggacaagtgatttc
tctggattgtatcaccaaatctggcatagggggacaaacgatcctggcaggatttattcg
gtgtgtgaagaggttggagagtcagatacagaggaactgggggagaaaaccaagaatgac
aaaccctctgagtcattgattatgaaaaaggccaatgaaaatgaaatgggtgaaagcagt
aatgagacaaaagaagtgcacaaaatgatagaggaaagaaacagattttctgacatacca
tgtatatgtgacaacgacgtgaatgacgagagtactgaaaattatgaagaaatcagcaga
ttatag
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