Ictalurus punctatus (channel catfish): 108276688
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Entry
108276688 CDS
T04658
Name
(RefSeq) probable 28S rRNA (cytosine-C(5))-methyltransferase
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108276688
Enzymes [BR:
ipu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
108276688
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Other ribosome biogenesis factors
108276688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NSUN5_N
NSUN5_fdxn-like
Methyltr_RsmB-F
RsmF-B_ferredox
FtsJ
Motif
Other DBs
NCBI-GeneID:
108276688
NCBI-ProteinID:
XP_017343993
Ensembl:
ENSIPUG00000009246
UniProt:
W5UHV3
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All DBs
Position
16:complement(9764591..9770534)
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AA seq
473 aa
AA seq
DB search
MALYTKAAEILDKVEQKRGAVKTLVYDSKFQNIKQLFALVCETQKYSAVLQEIIDTTRLL
KLTNLRQHLAKVLVYDLLIGQGLKCGGSWKAMMLKHRSRLQAALARIKVKRKVSRNQDLL
PPNVQHNNDVHIPRYVRVNTLKTTVEDVIDYLKRDGFSYQGTASQLEDLRSLSGKTFMSD
LHLRDLLVFSAKVNFHDHYLYKAGHIILQDKASCLPAYLLDPPVGGHVIDACAAPGNKTS
HLAAIMKNKGKLFAFDRDTKRLSTMSTLLLRAGVTCHQLANEDFLKVDPLSPAYKDVKHI
LLDPSCSGSGMVCLHDGGSEEQDPERLKALAAFQLRCLNHALKFPKLQNLVYSTCSIHTQ
ENEEVMSVCLEKNPDFRLIHLLPEWPERGRDPLTQCLRASTTKTFTHGFFIAMLERQTTR
NSGSLDEHHDCHRSPSKSEPTVGEEEQMVVSVDEQQLPAARKRNRKKPKKQKS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcactttatacgaaagcagcagagattctcgataaagtggagcaaaagaggggagct
gtgaaaactctggtctacgacagcaaattccagaatataaagcagctctttgccctcgtg
tgtgagactcagaaatactcagcagtgctccaggagattatcgacaccaccaggcttctg
aaattaaccaacctccgacagcatctagcaaaggttttggtttatgacttgctcattggc
cagggcttaaaatgtggtggaagctggaaggcaatgatgttgaaacatcgctccagatta
caagctgctttggcccgaattaaagtcaagcggaaagtcagtcgaaatcaggacctgctt
cctcccaatgtgcagcataacaacgatgtacatattccacgttatgtacgtgttaacacg
ttgaaaacaactgtggaggatgttattgactacctgaagagagatggattttcatatcaa
ggaacggcaagccagcttgaggatttacgctctctctctgggaagacttttatgagtgat
cttcacctcagagatcttctggttttcagtgcgaaagtgaacttccatgatcattacctg
tataaagcagggcacattatcttgcaagacaaggccagctgtctccctgcgtacctcctg
gaccccccagttggaggccatgtaattgatgcttgtgcagctcctgggaataaaaccagc
catctggcagccatcatgaaaaataaaggcaagctgtttgccttcgaccgtgatacaaag
cgactctccaccatgagcactctcctccttcgtgctggagtcacatgtcatcagctggct
aatgaggattttcttaaagtggatccactttccccagcatacaaggatgtgaagcacatc
cttctcgatccatcatgcagtggttcaggaatggtgtgtttgcatgatggtggctcagag
gaacaggaccctgagcgtctgaaggcactagccgcatttcagctgcgctgcctgaaccat
gcactgaagttcccaaagctccagaaccttgtctactccacctgctccatccatacacag
gagaacgaagaggtcatgtctgtctgtcttgagaaaaatcctgattttagactaatccat
cttcttcctgagtggcctgagcggggtcgtgacccactgacgcagtgtctcagagccagc
actacaaaaaccttcactcacggtttcttcatagccatgctggaaaggcagactactcga
aacagcggaagccttgatgaacatcatgactgtcacaggtctccttccaaaagtgaacct
actgttggtgaagaggagcaaatggtggtatctgtggatgaacaacaacttcctgcagca
aggaaaaggaatagaaagaaacccaaaaagcagaaatcctaa
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