Ictalurus punctatus (channel catfish): 108276766
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Entry
108276766 CDS
T04658
Name
(RefSeq) RNA-binding protein with serine-rich domain 1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108276766
03015 mRNA surveillance pathway
108276766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108276766
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108276766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_7
RRM_occluded
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
108276766
NCBI-ProteinID:
XP_017344176
Ensembl:
ENSIPUG00000011746
UniProt:
A0A2D0SNV6
LinkDB
All DBs
Position
2:21976259..21984089
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AA seq
285 aa
AA seq
DB search
MAPSPTKRRERSEDKARERGKDKAVVKEGAEKERGRDKNRKRRSNSTGSSSSRSRSSSSS
SSSSGSSSGSSSGSSSSSGSSRSGSSSSSRSSSSSGSSASPSPSRRRHDNRRRSRSKSKS
QKRVDEKERKRRSPSPKPTKLHVGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRCHPNLS
RGYAYVEYETSEDAQKALKHMDGGQIDGQEITATAVLTQRMRPAPRRLSPPRRMPPPPPM
WRRTPPRMRRRSRSPRRRSPVRRRSRSRSPGRRRHRSRSSSNSSR
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggctccatcacctaccaaacgcagggagcgatcagaagataaagctcgagagagggga
aaagataaagctgtggtgaaggaaggtgctgagaaagagcggggcagagacaagaaccgc
aagcgacgcagcaactcgactgggagcagcagtagcaggtctaggtccagttccagctcc
agcagcagctctggttcaagttcaggttcctcgagtggttccagctcctcttcaggctct
agccgctctggctcatccagctcctcgcggtcctccagctcctctggctcctcggcatca
cccagcccgagcagacgtcgacatgacaatcgcagacggtcacgctcaaagtctaagtct
cagaagagagttgatgaaaaagaacggaaaaggaggagccctagccctaagcccaccaaa
ctccacgttggaagattgactaggaatgttaccaaggatcacattcaagagatcttcgct
acgtatgggaaaatcaaaatgattgatatgccatcagaccgatgtcatccaaacttgtca
agagggtatgcctatgttgagtatgaaacttcagaggatgcccagaaggccctgaaacac
atggatggaggtcaaatagatggtcaagaaatcacagcgacagctgtcctgactcagagg
atgcgacctgcccctcgtaggctgtcccctccacgtaggatgcctcctcctccacccatg
tggcgccgtactccacctcgcatgaggagaaggtctaggtcaccacgtcgccgttcccca
gtaagacgacgatctcgctcaagatctccaggtcgcagacgccatcgctcacgctccagc
tcaaactcctcacgatag
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