KEGG   Ictalurus punctatus (channel catfish): 108276777
Entry
108276777         CDS       T04658                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04140  Autophagy - animal
ipu04142  Lysosome biogenesis
ipu04148  Efferocytosis
ipu05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    108276777
   04140 Autophagy - animal
    108276777
   04148 Efferocytosis
    108276777
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    108276777
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ipu04131]
    108276777
Membrane trafficking [BR:ipu04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    108276777
   Hops complex
    108276777
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C VPS18_solenoid_2nd TPR_Vps41 Clathrin zf-C3HC4_2 Beta-prop_WDR3_1st Beta-prop_WDR36-Utp21_1st zf-rbx1 zf-RING_2 zf-C3HC4 Beta-prop_IFT122_1st zf-C3H2C3 zf_RING_Vps8_fungal zf-RING_5 ADIP TPR_GEMI5 zf-ANAPC11 Beta-prop_EML_2 Beta-prop_VPS8 zf-RING-like zf-RING_UBOX WDR55 zf-C3HC4_3 zf-RING_Vps41 CC_Bre1
Other DBs
NCBI-GeneID: 108276777
NCBI-ProteinID: XP_017344206
Ensembl: ENSIPUG00000006137
UniProt: A0A2D0SNY9
LinkDB
Position
16:15058039..15070843
AA seq 927 aa
MAAFLQWRRFVFFDKETVKDPSENGANFALPVGISACDAGRGHVVLGDMDGQIWFLSRSL
QLTSFQAYKLRVTHLYQLKQHSILVSVGQDEHGINPLVKVWNTDKRDSGSPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGSCPVTGLAFR
QAGKVTHLFVATLEKVQCYTLSMKEYPRVELDIHGCALRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKILAHWHRGYLLLISRDIKSPNKPDFGSRQLTPTEKQVLTIYD
LDNKFIAYSAAFDDIIDVLAEWGSFYVLTRDGKMFMLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRQYGDHLYIKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAEKHSHHEWYLKIQLEDLKNYQEALRYIGRLPFEQAETNMKHYGKTLMHHV
PESTTVLLKRLCTNYQPIQDSTDRDSVDRLAENKASSEEFIPIFANNPRELRAFLEHMIT
VEPDSPQGVYDTLLELRLQDWAHEQDPEKKTTLQRAALLLLRSENTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYSKVVEACKRYGDQEVCLWEQALGYFARKEEDCK
AYISEVLQHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESKQIEEDERKIQQ
YREETAHLRSEIQELSTSAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCFESYAESEA
ECPTCTPENRKVMDMLRAQEQKRDLHDHFNRQLRSSNDGFSVVADYFGRGVFNKLTLITD
PPGGKPGSGGLEADLQRDLLIHTKRNA
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggctgcgttcttgcaatggagacgattcgtgttttttgataaagaaacggtgaaagat
ccgagcgagaatggagcaaactttgcgttaccggttggtatatcagcttgtgatgcaggg
cggggacatgttgttctcggagatatggatggtcaaatttggtttttatcgagatcgttg
cagttgacttccttccaggcctataaactgcgggtaacacacctgtaccagctgaagcaa
cacagcatcctggtgtcagtgggtcaggacgaacatggcattaacccactggtgaaggtg
tggaacacggataagagagacagcggtagtcctctgtgtactcgtatatttccagccatt
cctggaaacaaacctacagaagtgtcctgtcttagtgtacacgagaacctcaacttcatg
gccatcggctttacagacggcagtgtagttttgactaaaggtgacatcaccagagaccga
cacagtaagaccctcaccctgcatgaaggaagctgtcctgtcacaggtctggctttccgt
caagcaggaaaagtcacccacttgtttgtggctactcttgagaaagtacagtgttacacg
ttgtctatgaaggagtatcctcgcgtggagctggacatccacggctgtgctttgcgctgc
tctgccctcacggacccctctcaggactcgcagttcattgtagcaggagatgactgtgtg
tatctgtatcagcctgatgaaagaggaccctgctttgcctttgatggacataaaatcctg
gctcactggcaccggggttacttactgttgatttcccgagacatcaagtcacctaacaag
cctgactttgggtctagacagttgactccaacagaaaagcaggtcttgacgatttatgac
ctggacaacaagttcattgcctacagcgcagcttttgatgacatcatagatgtcctggca
gagtggggctcgttttatgtcctgacaagagatggaaagatgtttatgctgcaagagaag
gacacccagactaagcttgagatgctgtttaagaagaacctgtttgtgatggcgattaac
cttgcaaaaagccagcatctggataatgacggtctttctgagatatttagacagtatgga
gaccatctgtacatcaaaggggaccatgatggcgctatccaacagtatattcgaaccatt
gggaaactggaaccctcatatgtcatccgtaagttcctggatgcacagagaatacacaac
cttactgcatacctgcaggccctccacaggcaatccctggccaacgcagatcacaccacg
ctgctcctcaactgctacaccaaactgaaggacagctccaagctggaagagttcattaag
agcagtgagagcgaggtgcattttgatgtggagatagccatcaaggtgctgcgccaggct
gggtaccatagccacgccgtgttcctggcagagaaacactcccaccatgagtggtacctg
aagattcagctggaggatttaaagaactaccaggaggctctgcgctatattgggcggctg
ccgtttgagcaagccgagactaatatgaagcactatgggaaaactctgatgcaccatgtt
cccgagagcaccactgtgctgctcaagaggctttgtaccaattaccaacccatccaggac
tccactgaccgggacagtgtggacagattagccgagaacaaggccagttcagaagaattt
atccctatctttgctaataatccacgagagctacgagcattccttgagcacatgattacg
gtggaaccagattcaccacaaggtgtgtatgatacactgcttgagctgcgactgcaggac
tgggcccatgaacaggatcccgagaaaaagacaaccctgcagagggcagcattgttgctg
ctgaggagtgaaaacacagtgtttgataaagcgctggtgctctgccaaatgcacaacttc
aaagagggggtgctctatctgtatgagaagggcaaactgtaccagcaaatcatgcattac
cacatgcagaatgaggagtactctaaagtggtggaggcgtgtaagcgctacggtgatcag
gaagtttgtttgtgggaacaggccttgggctactttgcacgcaaagaagaagactgcaag
gcttacattagcgaggtgctacaacacatagatcagaataaccttatgccaccactgcta
gtggtacagacactcgcccataactccaccgcaacactgtcagtgattaaagattatctg
attaacaaactgcaaagggagagcaagcagattgaagaagatgagaggaaaattcagcag
taccgtgaggagactgcacacctgcgctctgagatccaggaactcagcaccagtgcaaag
attttccagaagacaaagtgcagcatgtgtaacagccctctagagttgccatcggtgcat
ttcctttgtggtcactctttccatcagcactgcttcgagagctacgcagagagtgaggct
gagtgcccaacatgcactcctgaaaacaggaaggtgatggacatgttacgggcacaagag
cagaaacgagacctacatgatcactttaatagacagttgaggagttctaatgacggtttc
tcagtggtggcggattactttggccgtggggttttcaataaactgactctgataacggat
cctcctggaggcaagcctgggtctgggggtttagaagctgatctacagagagacctactc
attcataccaaaagaaatgcctga

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