Ictalurus punctatus (channel catfish): 108276782
Help
Entry
108276782 CDS
T04658
Name
(RefSeq) bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN isoform X1
KO
K10900
werner syndrome ATP-dependent helicase [EC:
5.6.2.4
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108276782
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108276782
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108276782
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
108276782
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
108276782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DEAD
Helicase_C
RQC
HTH_40
RecQ_Zn_bind
HRDC
ResIII
ELAPOR1_C
UBA2_C
Motif
Other DBs
NCBI-GeneID:
108276782
NCBI-ProteinID:
XP_017344220
Ensembl:
ENSIPUG00000002090
UniProt:
A0A2D0SPL4
LinkDB
All DBs
Position
16:18229511..18269433
Genome browser
AA seq
1429 aa
AA seq
DB search
MDHSAPSERSLPEWMRKKHDGDVQAQSRGIYKKNIIEEDLPYLEFGGRVLYSQEKNDCSF
LTEDLRSSLTPGSAVGFDLEWPPSFTKGKTKKVALVQLCASEEKCYLFHISSMSGFPPGL
KMFLEDESIKKVGVGVQGDKWKLLSDYEITLKNFVELSDLANEKLKCFEKWSLDGLVKHL
FKKRILKDKDVRCSHWDDFGLTEEQKQYAAIDAYAGFIAHQKLERMVVNPGSLKTQDCLK
QKLCQISRELDDITRCIPEGVNCTSRTEKLVDDLSQQVASLKDLLVSNQNLAEERFSKAS
MDHSPKLQSAEISTMGPEANQTSASRDHVKHSLSLEEDTNGPVQTVQRECVMSLDITQYE
LQMLEMQARQEETEEQSILAFEKEKSALEDSAELSYELESDEDLDNEMIECAEKMEKLND
SIEKQSNEAEAIADDEDEVVEEDEDEGFDANFPQPAPEHIKCLKMYFGHHNFKPVQWKVI
QSVFEQRRDNLVVMATGYGKSLCFQFPPVYCGNISVVISPLIALMEDQVLQLQMSNIPAC
FLGSAQTSNVLAGLQKGHFRVVYMTPEFCSGNISLLEQLNKSIGVCLIAVDEAHCISQWG
HDFRSAYRDLGKLKRRLPDVPIVALTATASPSIRDDIAKSLHLANPLVTCTSFDRPNLYL
DVNRKSGDIIQDLKSLLVKKRGGDYEFEGSAIVYCPSKKETEKVSTALSKLGISCGVYHA
GLGIKQRKETQYQFMRDEIQCVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAG
RDGLPSACHVLWTPSDMTLNRFLLNQTKSDRFRGYKMEMMAKMEKYLNSTKCRRKLILSH
FEDKQLRKVTSGIMGTGKCCDNCKAGPVRSQSQDCSEQDVQDFGVCAFQLMGAVSAMEEK
FGITAPILLLRGSTSQRVPDRFRQHSLFGAGRGVSEAWWRALGRELISEQYLMEASGYNK
FSTLCKLTPKGRTWLSKAQNEKHRTLLLQPNRDLCQRVCVPKRKQDTTPVVVGVQDQVLR
NTTQRTNFRSQVASSAVVTNDRASHYRSDPGLSPAPKATPQPPAVSARETELQAELYSKL
VAERQKLASMKDIPPAILATNKILLDMAKLRPCSVAKLKLVDGVSEAKAAMLAPLLQTIT
DFCQTHGLQEAVTSASCAEETHSTRTGKASAVSLSDSAAITYRLFQIDGKSMRQVADARS
LPLAVVESHLLQAQKASRTLDTERAGLSSSLFNNITRILASPPLSSNLSDFKNIRAVVPE
DISTFLLRLCVAKLQDEGFPKPQPINLPSEQHQITWIEPQEKLVQADGVAKAVTSGLRTH
QLEPEQDNMDMSDDELFSELPMPEDAGPTSSVAHCNVEDARPSKSSGIELASWNLESLDR
DTQDLFSDSPVKTESQAPKRKLPDWPEAPTDSLNAAASKKNKKKKGLFM
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggatcatagtgcaccgagtgaaaggtcgcttccagaatggatgaggaagaaacatgac
ggtgatgtacaagctcagtcacggggtatctacaaaaagaacatcattgaggaggatctt
ccctatctggaatttggtggtagagttttatacagccaggagaaaaacgattgctcattt
ttaacagaggatttaagatcctctctcacgcctggctcggctgtgggctttgatttagaa
tggcctccgtctttcaccaaggggaagactaagaaggttgctttggttcagctttgcgcg
tcggaagagaaatgctacctttttcacatctcgtcgatgtcaggattccctcctggccta
aagatgtttctggaggatgagagcatcaaaaaggttggggtgggtgtccaaggagataag
tggaagctgctgtcagattacgaaattacgctgaagaattttgtcgaactctctgatttg
gcaaatgagaaactgaagtgttttgagaaatggagcctggatgggctggtcaaacacttg
ttcaaaaaacggatcttaaaagacaaggatgtgcgctgtagtcactgggatgactttgga
ctcacggaggagcagaaacaatatgctgcaatagatgcctatgctggattcatagcacac
cagaagctagaaagaatggtggtgaacccaggttcactgaaaactcaagattgcttgaaa
cagaagctttgccagattagcagagagcttgatgacattactagatgtattcctgaggga
gtcaactgcacgagcagaactgaaaagctagtggacgacttatctcagcaagttgcgtct
cttaaagatctactggtaagcaaccaaaacctagcagaagaacgtttctctaaagccagc
atggatcacagtcctaaattgcagagtgctgagatcagcaccatgggtcctgaagccaat
cagacatctgcatccagagaccatgtaaagcattcattgtcattggaagaggatacaaac
ggccctgttcagacagtacagagggaatgcgtcatgtccttggatatcactcagtatgag
cttcagatgctggagatgcaggccagacaggaggagaccgaggagcaatccattttagct
ttcgagaaggagaaatcggctctggaagactctgccgagttgtcatacgaactcgagagt
gatgaggatcttgacaatgaaatgattgagtgtgctgaaaaaatggagaaactgaatgat
agtattgaaaagcagtctaatgaagctgaggccattgctgatgatgaagatgaggttgtt
gaagaggatgaagatgaaggatttgatgcaaatttcccccagccagctcctgagcatatt
aaatgcctgaaaatgtattttggacatcacaattttaaaccggtacaatggaaagtgatt
cagtccgtgttcgagcagaggagggataaccttgttgtcatggcaactggttatggaaaa
agcttgtgcttccagttccctcctgtgtactgcgggaacatcagcgtggtcatctcccct
ctgatcgcactaatggaggaccaggtgctgcagctccagatgtccaacatccctgcttgt
ttcctcggatcagcacagactagtaatgtacttgctggcttacaaaaggggcatttcaga
gttgtatacatgacaccagaattctgctcaggaaacataagtctgcttgaacagctgaat
aaatccatcggtgtttgtctgattgcagtggatgaagctcattgtatttctcagtggggg
catgattttagaagtgcttatcgagaccttggaaaattgaaaagaaggcttccagatgtt
cccattgtggcactcacggccacagcaagcccctctattcgggacgacatagcgaagagc
ctccacttggcaaaccctctcgtcacttgcacgtctttcgatcggcccaacctctatctg
gacgtgaaccgcaaatctggtgacatcatccaagacctcaagtctctcctggtgaaaaag
agaggaggtgattatgaatttgaaggctcagccattgtgtattgcccatccaagaaggaa
acggaaaaagtgtcaactgctctgtctaagctgggcatcagctgtggcgtttaccacgca
ggtctcggcatcaaacagaggaaagagacacagtatcagttcatgagagatgagatacag
tgtgtggtggctaccgtagcttttggaatgggaattaacaagcctgatattagaaaggtc
attcattatggagcaccgaaagagatggagtcttactaccaggagatcggacgagcaggc
agagacggactgcccagtgcttgccatgttctctggacacctagcgacatgacactcaac
aggtttcttctcaaccagacaaagagtgaccgattcaggggctacaaaatggaaatgatg
gccaaaatggagaaatatttaaattccactaagtgcagaaggaagttgatcttgtcacat
tttgaggataagcaactccgaaaagtcacttcaggtataatggggaccggcaagtgttgc
gacaactgcaaagctgggcccgttagaagccagagccaggactgttcagaacaagatgtt
caggattttggtgtgtgtgccttccagctgatgggtgcagtgagtgcgatggaagagaaa
tttggtataacagctcccatactgctgctgcgtggctcaacttctcagagagttcctgat
cgctttcggcagcactctttgttcggcgcaggcaggggtgtgtctgaagcctggtggagg
gcgcttggccgtgagctcatcagtgagcagtacctcatggaggcctctggttataataag
ttcagcacgctctgtaaactcactcccaagggcaggacatggttaagcaaagcccagaat
gagaaacacagaaccctccttcttcaacctaacagagatctgtgtcaaagagtttgtgtg
ccgaagagaaaacaagatacaacacccgttgtggttggtgttcaagaccaagtattacga
aacacaactcagagaacaaatttcaggtctcaggtggcttccagtgccgtggtcacgaat
gaccgagcatcacattataggtcagatcctggtttgtcacctgctcccaaagccacgcct
cagcctccggcagtctctgctagagaaacagagttacaggccgagctgtacagcaagctg
gtagctgagaggcagaagctagccagcatgaaggacatccctcctgccatactggccacc
aacaaaatcctcctggacatggccaagttaaggccctgctcagtagccaagctgaagctg
gtggacggcgtgtctgaggctaaagcagccatgttagctcctctactccagaccatcaca
gacttctgccagacacacgggctgcaggaggccgtgacttctgcttcctgcgctgaagag
acgcacagtacacggacaggaaaagcctcagcagtgtctctgtctgacagtgcggccata
acttacagacttttccagattgatggcaaaagcatgagacaagtagctgatgctcgtagc
ttgcccttggcagtggttgagtcgcatctactacaggctcagaaggccagccggacactg
gacaccgagcgtgccggcctgtcttcgtctctattcaacaatatcacacgcatcctcgcc
tcacctcctctcagctcaaatctcagtgactttaagaatattcgtgctgtggtgccagag
gacatcagcacttttctcctcaggctgtgtgttgctaagctacaggatgaaggctttcca
aagccgcagcccattaacctgccatcggaacagcaccaaatcacctggatagagcctcag
gaaaagcttgtccaggcagatggtgttgctaaagcagtcacttcagggcttcgaacacac
cagctggagccagagcaggacaatatggacatgagtgatgatgaactctttagtgaactt
cccatgcctgaggatgcagggccgaccagcagtgttgctcactgtaatgtagaagatgcc
aggccatctaaaagtagtggaattgaactggcttcatggaacctggagagcctggacaga
gacactcaggacctgtttagtgattcaccagtcaagaccgaaagccaggcgccaaagagg
aagctgcctgactggccagaagcaccgactgactctcttaatgctgctgcatcaaaaaaa
aacaaaaagaagaaaggactcttcatgtga
DBGET
integrated database retrieval system
